View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_41 (Length: 222)
Name: NF18600_high_41
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 31824341 - 31824520
Alignment:
| Q |
32 |
ttttttctgtcattcttgagcactataaacattaggtatatcaattgaagaagtctctcaagatcaattgaaaaacaatcctcatcatagggaaactgtg |
131 |
Q |
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| T |
31824341 |
ttttttctgtcattcttgagcactataaacattaggtatatcaattgaagaagtctctcaagatcaattgaaaaacaatcctcattagagggaaactgtg |
31824440 |
T |
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| Q |
132 |
tatatttcttctattgcgtatcagtcacaaattaannnnnnnatacgatgatctcaattttatcattcaatacctatttt |
211 |
Q |
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| T |
31824441 |
tatatttcttctattctgtattaggcacaaattaatttttttatacgatgatctcaattttatcattcaatatctatttt |
31824520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 43326896 - 43326835
Alignment:
| Q |
76 |
ttgaagaagtctctcaagatcaattgaaaaacaatcctcatcatagggaaactgtgtatatt |
137 |
Q |
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| T |
43326896 |
ttgaagaagtatctctagatcatttgcataaaaatcctcatcataaggaaattgtgtatatt |
43326835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 42161527 - 42161465
Alignment:
| Q |
75 |
attgaagaagtctctcaagatcaattgaaaaacaatcctcatcatagggaaactgtgtatatt |
137 |
Q |
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| T |
42161527 |
attgaagaagtctctcaagatcaattgaaaaacaatcctcatcaaaggaaaactgtgtatatt |
42161465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 40536824 - 40536762
Alignment:
| Q |
75 |
attgaagaagtctctcaagatcaattgaaaaacaatcctcatcatagggaaactgtgtatatt |
137 |
Q |
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| T |
40536824 |
attgaagaagttgctcaagatcatttgcagaaaaatcctcatcataaggaaattgtgtatatt |
40536762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 10152273 - 10152329
Alignment:
| Q |
79 |
aagaagtctctcaagatcaattgaaaaacaatcctcatcatagggaaactgtgtata |
135 |
Q |
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| T |
10152273 |
aagaagtctctcaatatcatttgataaacaatcatcatcaaagagaaacggtgtata |
10152329 |
T |
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