View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_high_7 (Length: 469)

Name: NF18600_high_7
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_high_7
NF18600_high_7
[»] chr5 (7 HSPs)
chr5 (17-453)||(20922694-20923108)
chr5 (110-178)||(14295457-14295527)
chr5 (107-169)||(18875309-18875373)
chr5 (122-178)||(36639485-36639543)
chr5 (110-169)||(28586824-28586885)
chr5 (110-175)||(39594759-39594825)
chr5 (105-141)||(29117018-29117054)
[»] chr3 (4 HSPs)
chr3 (17-450)||(3182139-3182576)
chr3 (110-178)||(33405216-33405286)
chr3 (122-178)||(50456547-50456605)
chr3 (84-178)||(38462204-38462302)
[»] chr6 (4 HSPs)
chr6 (122-204)||(281871-281955)
chr6 (112-160)||(10154174-10154224)
chr6 (110-175)||(29274281-29274348)
chr6 (111-208)||(26491626-26491725)
[»] chr4 (4 HSPs)
chr4 (122-208)||(52735085-52735173)
chr4 (113-178)||(3175905-3175972)
chr4 (110-170)||(8422896-8422956)
chr4 (122-180)||(49085952-49086012)
[»] chr2 (3 HSPs)
chr2 (105-208)||(42817395-42817500)
chr2 (126-183)||(9556206-9556265)
chr2 (113-141)||(41851253-41851281)
[»] chr1 (8 HSPs)
chr1 (105-168)||(7273998-7274063)
chr1 (109-170)||(44940293-44940354)
chr1 (108-178)||(49517019-49517091)
chr1 (121-178)||(4548683-4548742)
chr1 (107-178)||(51695544-51695616)
chr1 (110-170)||(1255488-1255550)
chr1 (108-175)||(4200178-4200247)
chr1 (110-175)||(39777614-39777681)
[»] chr8 (4 HSPs)
chr8 (108-138)||(1930000-1930030)
chr8 (108-175)||(12361141-12361210)
chr8 (108-170)||(29699203-29699267)
chr8 (105-141)||(8799351-8799387)
[»] chr7 (1 HSPs)
chr7 (108-157)||(39591537-39591588)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 20922694 - 20923108
Alignment:
Q  17 gatgaagaggctaagcggggtaaaatggtaatttcccttttatcaaaaacctatacaaggctaagttcttaacatttaagcgtttatttatgttatttct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  20922694 gatgaagaggctaagcggggtaaaatggtaatttcccttttatcgaaaacctatacaaggctaagttcttatcatttaagtgtttatgtatgttatttct 20922793  T
Q  117 atagaaaaagataaaataaagtcaatgttttcatacaagttatatgctgttttcgtaagctaccctaatgagcacatggaaataagctaaaagcagtgta 216  Q
    |||||||||||||||||||||         ||||             |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  20922794 atagaaaaagataaaataaag---------tcat-------------tgttttcgtatgctaccctaatgaacacatggaaataagctaaaagcagtgta 20922871  T
Q  217 tttcataaggtctcacacctgcttatgccagtatataaattcaaataattcacttcatggagcctctttattcataagcacctaaaaccttacaattggg 316  Q
    ||| || ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20922872 ttttatcaggtctcacatgtgcttatgccagtatataaattcaaataagtcacttcatggagcctctttattcataagcacctataaccttacaattggg 20922971  T
Q  317 aatcaaatgtttatcttggttaaaaaattgtaagaatctagaaggtaatctaaactaagacctgttgcagtttttagtcatgatcgatgatggttaattt 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20922972 aatcaaatgtttatctcggttaaaaaattgtaagaatctagaaggtaatctaaactaagacctgttgcagtttttagtcatgatcgatgatggttaattt 20923071  T
Q  417 tgtttgattgcagcttgagttgggccacactggcggt 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  20923072 tgtttgattgcagcttgagttgggccacactggcggt 20923108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 14295457 - 14295527
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    ||||||||||  ||||||||||||||||||||  |||||||||| ||| |||| |||||||||||||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagcta 14295527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 18875309 - 18875373
Alignment:
Q  107 tgttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgtttt 169  Q
    |||||||||||||  |||||| |||||||||||||  || |||||||||||||||| ||||||||    
T  18875309 tgttatttctatatcaaaagacaaaataaagtcaaattgatttcatacaagttataagctgtttt 18875373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 36639485 - 36639543
Alignment:
Q  122 aaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    ||||||||||||||| ||||  |||||||||||||||||||  |||||||| |||||||    
T  36639485 aaaagataaaataaaatcaaaatgttttcatacaagttatagactgttttcataagcta 36639543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 28586885 - 28586824
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgtttt 169  Q
    ||||||||||  ||||||||||||||||||||  |||||||||| || ||||| ||||||||    
T  28586885 tatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgtttt 28586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 39594759 - 39594825
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa-tgttttcatacaagttatatgctgttttcgtaag 175  Q
    ||||||||||||||||||||||||||||| || |||||||  | ||||| || ||||||||| ||||    
T  39594759 tatttctatagaaaaagataaaataaagtaaattgttttcgcataagttgtaagctgttttcataag 39594825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 29117054 - 29117018
Alignment:
Q  105 tatgttatttctatagaaaaagataaaataaagtcaa 141  Q
    |||||||||||||||  ||||||||||||||||||||    
T  29117054 tatgttatttctataacaaaagataaaataaagtcaa 29117018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 3182576 - 3182139
Alignment:
Q  17 gatgaagaggctaagcggggtaaaatggtaatttcccttttatcaaaaacctatacaaggctaagttcttaacatttaagcgtttatttat--gttattt 114  Q
    |||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||| |||| |||||||| |||||| |||  |||| ||    
T  3182576 gatgaagaggctaagcggagtaaaatggtaatttcccttttaacgaaaacctatacaagactaagtgcttatcatttaagtgtttatgtataagttactt 3182477  T
Q  115 ctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagctaccctaatgagcacatggaaataagctaaaagcag 212  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  3182476 ctatagaaaaagataaaataaagtcaaattgttttcatacaagttataggctgttttcgtaagccaccctaatgagcatatggaaataagctaaaagcag 3182377  T
Q  213 tgtatttcataaggtctcacacctgcttatgccagtatataaattcaaataattcacttcatggagcctctttattcataagcacctaaaaccttacaat 312  Q
    ||||||||||||||||| |||| |||||||||||||| |||| ||||||||| ||||||| | ||||||||||||||||||| | ||| ||||||| |||    
T  3182376 tgtatttcataaggtctgacacgtgcttatgccagtagataagttcaaataagtcacttcgtagagcctctttattcataagaatctataaccttataat 3182277  T
Q  313 tgggaatcaaatgtttatcttggttaaaaaattgtaagaatctagaaggtaatctaaactaagacctgttgcagtttttagtcatgatcgatgatggtta 412  Q
    ||||||||||||||||||||  |||||||| || ||||||  ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  3182276 tgggaatcaaatgtttatctcagttaaaaatttctaagaaagtagaaggtaatataaactaagacctgctgcagtttttagtcatgatcaatgatggtta 3182177  T
Q  413 attttgtttgattgcagcttgagttgggccacactggc 450  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  3182176 attttgtttgattacagcttgagttgggccacactggc 3182139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 33405286 - 33405216
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    ||||||||||| ||||| ||||||||||| ||  |||||||||| ||| |||| ||||||||| |||||||    
T  33405286 tatttctatagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcataagcta 33405216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 50456605 - 50456547
Alignment:
Q  122 aaaagataaaataaagtca--atgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    |||||||| ||||||||||  ||||||||||||||||| || ||||||||| |||||||    
T  50456605 aaaagatacaataaagtcattatgttttcatacaagttctaagctgttttcttaagcta 50456547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 38462204 - 38462302
Alignment:
Q  84 cttaacatttaagcgtttatttat--gttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    |||| ||| |||| ||||||||||  | ||||||||||  ||||||||||||||||||||  |||||||||| | | ||||  |||||||| |||||||    
T  38462204 cttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagcta 38462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 281955 - 281871
Alignment:
Q  122 aaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagctaccctaatgagcacatggaaataagct 204  Q
    ||||||||||||||||||||  |||||||||| ||| |||| ||||| ||| ||||||| ||||  |||| ||||||||||||||    
T  281955 aaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagct 281871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 10154174 - 10154224
Alignment:
Q  112 tttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttata 160  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  10154174 tttctatagaaaaagataaaataaagtcaaactgttttcatataagttata 10154224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 29274348 - 29274281
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaag 175  Q
    ||||||||||| ||||||||||||||||||||  |||||||||| ||| ||||  |||||||| ||||    
T  29274348 tatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 26491626 - 26491725
Alignment:
Q  111 atttctatagaaaaagataaaataaagtca--atgttttcatacaagttatatgctgttttcgtaagctaccctaatgagcacatggaaataagctaaaa 208  Q
    |||||||||| |||||||||||||||||||   ||||||||||  || ||||| || || || ||||||| ||| | ||||  ||||||||||| |||||    
T  26491626 atttctatagcaaaagataaaataaagtcatcctgttttcatatgagatatatactattatcataagctaacctgaagagcttatggaaataaggtaaaa 26491725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 52735085 - 52735173
Alignment:
Q  122 aaaagataaaataaagtcaatgt--tttcatacaagttatatgctgttttcgtaagctaccctaatgagcacatggaaataagctaaaa 208  Q
    ||||||||||||||||||||  |  ||||||| |||||||||| ||||||||||||||| | | | ||||  |||||||||||||||||    
T  52735085 aaaagataaaataaagtcaaattactttcatataagttatatgttgttttcgtaagctatcttgaagagcttatggaaataagctaaaa 52735173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 3175905 - 3175972
Alignment:
Q  113 ttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    |||||||| ||||||||||||||||||||  ||||||||   |||||||| ||||||||| |||||||    
T  3175905 ttctatagcaaaagataaaataaagtcaaattgttttcaagtaagttataagctgttttcataagcta 3175972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 8422956 - 8422896
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaatgttttcatacaagttatatgctgttttc 170  Q
    ||||| |||| |||||||||||||||||||| |||||||||| ||| |||| | |||||||    
T  8422956 tatttttataaaaaaagataaaataaagtcattgttttcatataagctataagttgttttc 8422896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 49085952 - 49086012
Alignment:
Q  122 aaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagctacc 180  Q
    |||||||||||||| |||||  | ||||||||||||||||| | ||||||| |||||||||    
T  49085952 aaaagataaaataatgtcaaactattttcatacaagttataagttgttttcataagctacc 49086012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 42817500 - 42817395
Alignment:
Q  105 tatgttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagctaccctaatgagcacatggaaataag 202  Q
    |||||||||||||||  |||||||||||| |||||||  |||||||||| |||| |||  |||||||| |||||||  || | ||||  |||||| ||||    
T  42817500 tatgttatttctataccaaaagataaaatgaagtcaagctgttttcatataagtaataaactgttttcataagctattctgaagagcttatggaagtaag 42817401  T
Q  203 ctaaaa 208  Q
    ||||||    
T  42817400 ctaaaa 42817395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 9556206 - 9556265
Alignment:
Q  126 gataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagctacccta 183  Q
    ||||||||||||||||  |||||||||||||| ||||  |||||||| ||||||| ||||    
T  9556206 gataaaataaagtcaacgtgttttcatacaagctataaactgttttcataagctatccta 9556265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 41851281 - 41851253
Alignment:
Q  113 ttctatagaaaaagataaaataaagtcaa 141  Q
    |||||||||||||||||||||||||||||    
T  41851281 ttctatagaaaaagataaaataaagtcaa 41851253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 7274063 - 7273998
Alignment:
Q  105 tatgttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttt 168  Q
    |||||||||| ||||  ||||||| ||||||||||||  ||||||||||||||||||| |||||||    
T  7274063 tatgttatttttataacaaaagatgaaataaagtcaaattgttttcatacaagttataagctgttt 7273998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 44940293 - 44940354
Alignment:
Q  109 ttatttctatagaaaaagataaaataaagtcaatgttttcatacaagttatatgctgttttc 170  Q
    |||||| ||||| ||||||||||||||||||| |||||||| | |||||||| | |||||||    
T  44940293 ttatttttatagcaaaagataaaataaagtcactgttttcaaataagttataagttgttttc 44940354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 49517019 - 49517091
Alignment:
Q  108 gttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    ||||||||||||  ||||||||||||||||||||  |||||||||  ||| |||| ||||||||| |||||||    
T  49517019 gttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagcta 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 4548683 - 4548742
Alignment:
Q  121 aaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    |||||||||||||||||||||  |||||| |||||||| ||| ||||||||| |||||||    
T  4548683 aaaaagataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagcta 4548742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 51695616 - 51695544
Alignment:
Q  107 tgttatttctatagaaaaagataaaataaagtcaa-tgttttcatacaagttatatgctgttttcgtaagcta 178  Q
    |||||||||||||| ||||||||||||||||| || ||||||| || |||||||  | ||||||| |||||||    
T  51695616 tgttatttctatagtaaaagataaaataaagtaaattgttttcgtataagttatcagatgttttcataagcta 51695544  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 1255550 - 1255488
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttc 170  Q
    ||||||||||| ||||||| |||| |||||||  | ||||||||||||||||| |||||||||    
T  1255550 tatttctatagtaaaagatgaaatgaagtcaaattcttttcatacaagttataagctgttttc 1255488  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 4200178 - 4200247
Alignment:
Q  108 gttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaag 175  Q
    ||||||| ||||  ||||||||||||||||||||  |||||||||| ||| |||||  ||||||||||||    
T  4200178 gttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatatattgttttcgtaag 4200247  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 39777614 - 39777681
Alignment:
Q  110 tatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaag 175  Q
    ||||||||||  |||||||| |||||||||||  || ||||||||||| |||||| ||||||| ||||    
T  39777614 tatttctataacaaaagatagaataaagtcaaactgctttcatacaagctatatgatgttttcttaag 39777681  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 1930000 - 1930030
Alignment:
Q  108 gttatttctatagaaaaagataaaataaagt 138  Q
    |||||||||||||||||||||||||||||||    
T  1930000 gttatttctatagaaaaagataaaataaagt 1930030  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 12361141 - 12361210
Alignment:
Q  108 gttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagttatatgctgttttcgtaag 175  Q
    |||||||||||| | ||||||||||| |||||||  |||||||||| ||| |||| ||||||||| ||||    
T  12361141 gttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataag 12361210  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 29699203 - 29699267
Alignment:
Q  108 gttatttctatagaaaaagataaaataaagtc--aatgttttcatacaagttatatgctgttttc 170  Q
    ||||||||||||  ||||||||||||||||||  |||||| ||||  |||||||| |||||||||    
T  29699203 gttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaagttataagctgttttc 29699267  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 8799351 - 8799387
Alignment:
Q  105 tatgttatttctatagaaaaagataaaataaagtcaa 141  Q
    |||||||||||||||  ||||||||||||||||||||    
T  8799351 tatgttatttctataacaaaagataaaataaagtcaa 8799387  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 39591588 - 39591537
Alignment:
Q  108 gttatttctatagaaaaagataaaataaagtcaa--tgttttcatacaagtt 157  Q
    ||||||||||||  ||||||||||||||||||||  |||||||||| |||||    
T  39591588 gttatttctataacaaaagataaaataaagtcaaattgttttcatataagtt 39591537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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