View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_8 (Length: 457)
Name: NF18600_high_8
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 1178694 - 1179142
Alignment:
| Q |
1 |
gcaataattttctctctccttcttttgacacgacaaaactgttttattttgttataattgtgatatagaaatttaaacctctgaatgtgaaggtgacaaa |
100 |
Q |
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| T |
1178694 |
gcaataattttttctctccttcttttgacacgacaaaactgttttattttgttataattgtgatatagaaatttaaacctctgaatgtgaaggtgacaaa |
1178793 |
T |
|
| Q |
101 |
cacaatttaaattctacacacacaactgcta----ggttccaagttaaaatccgataaaggtgtttggtctaataatatcgacattgccatttaaactaa |
196 |
Q |
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| T |
1178794 |
cacaatttaaattctacacacacaactgctagctaggttccaagttaaaacccgataaaggtgttcggtctaataatatcgacattgccatttaaactaa |
1178893 |
T |
|
| Q |
197 |
gctatactgacctattgactcatcgaatgttagaacataaacgacagcaaactaataaattttgaagcattacctcaggagacatgtggatttgcatatc |
296 |
Q |
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| T |
1178894 |
gctatactgacttattgattcatcgaatgttagaacataaacgacagcaaactaataaattttgaagcattacctcaggagacatggggatttgcatatc |
1178993 |
T |
|
| Q |
297 |
ttgttcatttcgcccttcatcgaattcattctctaaatcatcaatgtcatcttcctcttcatctccttcaactctagcacacccttcaaaactcatacca |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1178994 |
ttgttcatttcgcccttcatcgaattcattctctaaatcatcaatgtcatcttcctcttcatctccttcaactctagcacacccttcaaaactcatacca |
1179093 |
T |
|
| Q |
397 |
cacccggtcaattgaaaaacaaaaggagtacctccatttcatatatttt |
445 |
Q |
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| T |
1179094 |
cacccggtcaattgaaaaacaaaaggagtacctccatttcatatatttt |
1179142 |
T |
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