View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_10 (Length: 448)
Name: NF18600_low_10
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 69 - 435
Target Start/End: Complemental strand, 27224204 - 27223841
Alignment:
| Q |
69 |
atgagtttgatggatatggttttggtctctcataattaggaggtgttgtggacccacaccttctttgtagtagcacattcttctactcattcactttctt |
168 |
Q |
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| T |
27224204 |
atgagtttgatggatatggttttggtctctcat---ttgaaggtgttgcgggcccacaccttatttgtagtagcacattcttctactcattcactttctt |
27224108 |
T |
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| Q |
169 |
gcatactcaagccaagtgataagattagatgtgcttttccattcaagagaactttttcttgttctgctcttgtccaggtgtcttctggcttctcaaattg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||| |
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| T |
27224107 |
gcatactcaagccaagtgataagattagatgtgcttttccattcaagagaactttttcttgttctgctcttttccaggtgtcttctagtttttcaaattg |
27224008 |
T |
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| Q |
269 |
ttttccatcctcttaagtaaccattggaacataatcaccattagtgactatcctacacatccttgtatcttgagatttgatgtagagttgcacatttcct |
368 |
Q |
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| T |
27224007 |
attttcatcctcttaagtaaccattggaacataatcaccattagttactatcctacacatgcttgtatcttgagatttgatgtagagttgcacatttcct |
27223908 |
T |
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| Q |
369 |
ttataaaagctatagtttaacccattgaagaaatgtggttttgattgagaaccttcttatatgtgat |
435 |
Q |
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| T |
27223907 |
ttctaaaagctatattttaacccattgaagaaatgtggtcttgattgagaaccttcttatatgtgat |
27223841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 27224627 - 27224569
Alignment:
| Q |
18 |
cattttaatttggggaggaaatttacttgtgtacaactaaacggtagatgtatgagttt |
76 |
Q |
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| T |
27224627 |
cattttaatttggggaggaaatttacttgtgtgcaactaaacggtagatgtatgagttt |
27224569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 370
Target Start/End: Original strand, 12084711 - 12084947
Alignment:
| Q |
137 |
agtagcacattcttctactcattcactttcttgcatactcaagccaagtgataagatta---gatgtgcttttccattcaagagaactttttcttgttct |
233 |
Q |
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| T |
12084711 |
agtagcacattcttccaatcttttcctttcttgcatgctcaagccaagttataatattattagatgagtttttgcatccaagagaactctttcttatttt |
12084810 |
T |
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| Q |
234 |
gctcttgtccaggtgtcttctggcttctcaaattgttttccatcctcttaagtaaccattggaacataatcaccattagtgactatcctacacatccttg |
333 |
Q |
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| T |
12084811 |
gtcattgtccatgtgtcttatggtttctcaatttgagtttcatcctcttgagaaatcgtaggaagataatcaccatcaacaactattctccatatccttg |
12084910 |
T |
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| Q |
334 |
tatcttgagatttgatgtagagttgcacatttccttt |
370 |
Q |
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| T |
12084911 |
tatcttgatatttgatgttgagtttcatatttccttt |
12084947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 419
Target Start/End: Original strand, 25427240 - 25427335
Alignment:
| Q |
324 |
cacatccttgtatcttgagatttgatgtagagttgcacatttcctttataaaagctatagtttaacccattgaagaaatgtggttttgattgagaa |
419 |
Q |
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||||||||| |||||||||||||||||||||| |||| |||||||| ||||| | ||||||| | ||||| ||||||||||| || |||||||| |
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| T |
25427240 |
cacatccttatatcttgagatttgatgtagagatgcatctttcctttccaaaagttgtagtttagcgcattgtagaaatgtggtcttaattgagaa |
25427335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 25427074 - 25427121
Alignment:
| Q |
121 |
cccacaccttctttgtagtagcacattcttctactcattcactttctt |
168 |
Q |
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| T |
25427074 |
cccacaccttcattgtagtagaaaattcttccactcattcactttctt |
25427121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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