View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_13 (Length: 386)

Name: NF18600_low_13
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_13
NF18600_low_13
[»] chr1 (6 HSPs)
chr1 (113-254)||(1205192-1205330)
chr1 (270-366)||(17431231-17431327)
chr1 (270-366)||(44002314-44002410)
chr1 (270-366)||(3322171-3322267)
chr1 (9-62)||(1205019-1205072)
chr1 (74-106)||(1205086-1205118)
[»] chr7 (7 HSPs)
chr7 (270-366)||(15846814-15846910)
chr7 (270-366)||(15856024-15856120)
chr7 (270-366)||(6621260-6621356)
chr7 (270-366)||(11911423-11911519)
chr7 (270-370)||(44094833-44094934)
chr7 (270-366)||(36308067-36308158)
chr7 (278-349)||(21103510-21103581)
[»] chr6 (2 HSPs)
chr6 (270-366)||(17812310-17812406)
chr6 (270-366)||(33132181-33132277)
[»] chr5 (1 HSPs)
chr5 (270-366)||(11123665-11123761)
[»] chr2 (2 HSPs)
chr2 (270-366)||(17102674-17102770)
chr2 (270-366)||(32019408-32019504)
[»] chr4 (2 HSPs)
chr4 (270-363)||(16549415-16549508)
chr4 (278-336)||(12601768-12601826)
[»] chr8 (1 HSPs)
chr8 (273-366)||(14848322-14848415)
[»] chr3 (1 HSPs)
chr3 (270-330)||(32922727-32922787)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 1205192 - 1205330
Alignment:
Q  113 taacaaatttatatatgtacacttttctcattctcctcaaaagagcatcctagttttacaagacttcttgtcaacaaaaataggtagttcataaggcttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  1205192 taacaaatttatatatgtacacttttctcattctcctcaaaagagcatcctagttttacaagactt---gtcaacaaaaataggtagttcataaggcttt 1205288  T
Q  213 aaatttagttgctcaaacattcttccgaaaccatataagagg 254  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  1205289 aaatttagttgctcaaacattcttccgaaaccatgtaagagg 1205330  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 17431327 - 17431231
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||  | |||||||||||||    
T  17431327 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatatagtgaaatagtggatactagcataaaatgtggccgcc 17431231  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 44002410 - 44002314
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  44002410 acagaaagatgattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 44002314  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 3322267 - 3322171
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||  | |||||||||||||    
T  3322267 acagaaagataattctctcatttcattaataaggacatcttgaatacaatcaggtaatacagtaaaatagtggatattagcataaaatgtggccgcc 3322171  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 1205019 - 1205072
Alignment:
Q  9 gcaaaggtggtagattggtgttttgtgatcaatgaaagaaactgtgtggctcaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1205019 gcaaaggtggtagattggtgttttgtgatcaatgaaagaaactgcgtggctcaa 1205072  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 1205086 - 1205118
Alignment:
Q  74 ttgttacaatttccgtgtaatattattacataa 106  Q
    |||||||||||| ||||||||||||||||||||    
T  1205086 ttgttacaatttgcgtgtaatattattacataa 1205118  T

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Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 15846814 - 15846910
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||    
T  15846814 acagaaagataattatctcatttcattaataaggacatcttgaatataatcaggtaatacagtgaaatagtggatactagtataaaatgtggccgcc 15846910  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 15856024 - 15856120
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||    
T  15856024 acagaaagataattatctcatttcattaataaggacatcttgaatataatcaggtaatacagtgaaatagtggatactagtataaaatgtggccgcc 15856120  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 6621260 - 6621356
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  6621260 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 6621356  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 11911423 - 11911519
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||  | |||||||||||||    
T  11911423 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatagagtgaaatagtggatactagcataaaatgtggccgcc 11911519  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 370
Target Start/End: Original strand, 44094833 - 44094934
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagt-ggatactagtgtcaaatgtggccgcctt 368  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  | ||| |||||||||||||||||| ||||||||   | |||||||||| ||||    
T  44094833 acagaaagataatgatctcatttcattaataaggacatcttgaatgcaatcatgtaatacagtgaaatagtgggatactaacataaaatgtggccacctt 44094932  T
Q  369 ag 370  Q
    ||    
T  44094933 ag 44094934  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 36308158 - 36308067
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||     ||||||||||||||||  | |||||||||||||    
T  36308158 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcagataata-----aaatagtggatactagcataaaatgtggccgcc 36308067  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 21103510 - 21103581
Alignment:
Q  278 ataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactag 349  Q
    |||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||  |||||||||||    
T  21103510 ataactatctcatttcattaataagaacatcttgaatacaatcaggtaatacagtgaaaaggtggatactag 21103581  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 17812406 - 17812310
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  17812406 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 17812310  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 33132181 - 33132277
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  33132181 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 33132277  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 11123761 - 11123665
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  11123761 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 11123665  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 17102674 - 17102770
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  17102674 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 17102770  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 32019408 - 32019504
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||  | |||||||||||||    
T  32019408 acagaaagataattatctcatttcattaataaggatatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggccgcc 32019504  T

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Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 16549508 - 16549415
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggcc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  | ||||||||||    
T  16549508 acagaaagataattatctcatttcattaataaggacatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtggcc 16549415  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 12601768 - 12601826
Alignment:
Q  278 ataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaa 336  Q
    |||| |||||||||||||||||||| |||||||||||| | |||||||||||| |||||    
T  12601768 ataactatctcatttcattaataagaacatcttgaatacaatcaggtaatacaatgaaa 12601826  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 14848322 - 14848415
Alignment:
Q  273 gaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaatacagtgaaatagtggatactagtgtcaaatgtggccgcc 366  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||  | |||||| ||||||    
T  14848322 gaaagataattatctcatttcattaataaggatatcttgaatacaatcaggtaatacagtgaaatagtggatactagcataaaatgtagccgcc 14848415  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 32922787 - 32922727
Alignment:
Q  270 acagaaagataattatctcatttcattaataaggacatcttgaatagagtcaggtaataca 330  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||    
T  32922787 acagaaagataactatctcatttcattaataagaacatcttgaatacaatcaggtaataca 32922727  T

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