View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_14 (Length: 375)
Name: NF18600_low_14
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 54814211 - 54814566
Alignment:
| Q |
5 |
gagaagcaaaggtttaggattaccaaccacttaatgttgaccatttcttgacagggataggattaggtactacaggttgatgtggagctataggatgatg |
104 |
Q |
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| T |
54814211 |
gagaaacaaaggtttaggattaccaaccacttaatgttgaccatttcttgacagggataggattaggtactacaggttgatgtggagctataggatgatg |
54814310 |
T |
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| Q |
105 |
atgaggaacggcaggtttttgggccaacgttgaatgaagcaaaaacgaaaacagaaacaaccttctgagcannnnnnnnnnnncctgtcacaattcaaaa |
204 |
Q |
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| T |
54814311 |
atgaggaacggcaggtttttgggccaacgttgaatgaagcaaaaatgaaaacagaaacaaccttctgagcatttttattttttcctgtcacaattcaaaa |
54814410 |
T |
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| Q |
205 |
tcaatgtcaatcaaaacatggaattagaatcacaatgaaaatattaattggaacaaaaggccttcattatgatatttttcattgtttggaacacaacctt |
304 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54814411 |
tcaatgtcaatcaaaacatggaattagaattacaatgaaaatattaattggaacacaaggccttcattatgatatttttcattgtttggaacacaacctt |
54814510 |
T |
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| Q |
305 |
ttaacgttcattttgcagtacgatttattaacctcgtgcataaatattgatataat |
360 |
Q |
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| T |
54814511 |
ttaacgttcattttgcagtaagatttattaacctcgtgcataaatattgatataat |
54814566 |
T |
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