View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_15 (Length: 353)
Name: NF18600_low_15
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 337
Target Start/End: Original strand, 27150195 - 27150529
Alignment:
| Q |
3 |
tcgagagagatgaaattaaaaagcactattaattcccttgaatcaaaacttacagacaccgaatatgaaagacaacaatacatggatgaatccagaaatt |
102 |
Q |
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| T |
27150195 |
tcgagagaactgaaattaaaaagcactattaattcccttgaatcaaaacttacagacactgaatatgaaagacaacaatacatggatgaatctagaaatt |
27150294 |
T |
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| Q |
103 |
tgaaggttcagttacagcagacatgtcaatttgaaaatgagattatggctctcaagagtgagcttaacacttccaatactgagaaagagagactaaaagc |
202 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27150295 |
cgaaggttcagttgcagcagacatgtcaatttgaaaatgagattatggctctcaagagtgagcttaacacttccaatactgagaaagagagactaaaagc |
27150394 |
T |
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| Q |
203 |
ctcattatgcttgaaatctgaactatgtgaagatctgaaggcagaaaatacatcatttgaacgaaagatgtcaagcttggagaaggctgcatcagaattg |
302 |
Q |
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| T |
27150395 |
ctcattatgcttgaaatctgaactatgtgaagatctgaaggcagagaatacatcatttgaacgaaagatgtcaagcttggagaaggctgcatcagaattg |
27150494 |
T |
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| Q |
303 |
gagcactgcgagagaactagaacatcccttgaaga |
337 |
Q |
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| T |
27150495 |
gagcactgcaagagaactagaacatcccttgaaga |
27150529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4492017 - 4491797
Alignment:
| Q |
3 |
tcgagagagatgaaattaaaaagcactattaattcccttgaatcaaaacttacagacaccgaatatgaaagacaacaatacatggatgaatccagaaatt |
102 |
Q |
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|||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4492017 |
tcgagagaactgaaattcaaaagcactattaattcacttgaatcaaaacttacagacaatgaatatgaaagacaacaatacatggatgaatccagaaatt |
4491918 |
T |
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| Q |
103 |
tgaaggttcagttacagcagacatgtcaatttgaaaatgagattatggctctcaagagtgagcttaacacttccaatactgagaaagagagactaaaagc |
202 |
Q |
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|||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||| ||| | |||||| |||||||| ||||||||||||| ||||| |
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| T |
4491917 |
tgaatgttcaattgcagcacgcatgtgaatttgaaaatgagattatggctctcaagagcgagttgaacactgccaatactaagaaagagagactgaaagc |
4491818 |
T |
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| Q |
203 |
ctcattatgcttgaaatctga |
223 |
Q |
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||| ||||||||||||||||| |
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| T |
4491817 |
ctcgttatgcttgaaatctga |
4491797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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