View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_18 (Length: 314)
Name: NF18600_low_18
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 10278342 - 10278231
Alignment:
| Q |
94 |
ggaagccatgttagtgacttatgatttggtgcttaaaacacaagagtgactagctccttttatactagtcgtgatcttagtgaatccacaatcagctgca |
193 |
Q |
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| T |
10278342 |
ggaagccatgttagtgacttatgatttggtgcataaaacacaagagtgactagctccttttatactagtcgtgatcttagtgaatccacaatcagctgca |
10278243 |
T |
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| Q |
194 |
tgtctcagtctt |
205 |
Q |
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| T |
10278242 |
tgtctcagtctt |
10278231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 10253847 - 10253666
Alignment:
| Q |
24 |
gtttctcatagttggcaagccctagagggatgatatagagagcaaaaaggagcaacactagaaagcttaaggaagccatgttagtgacttatgatttggt |
123 |
Q |
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| T |
10253847 |
gtttctcgtagttggcaaaccccttagggatgacaaagagagcaaagaggagcatcattagaaagtttgaggaagccatgttagtgacttataatttggt |
10253748 |
T |
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| Q |
124 |
gcttaaaacacaagagtgactagctccttttatactagtcgtgatcttagtgaatccacaatcagctgcatgtctcagtctt |
205 |
Q |
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| T |
10253747 |
gcataaaatacaagtgtgaccagctccttttatactagtcgtgatcttagtgaatccactcacagctgcatgtctcaatctt |
10253666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 10216995 - 10216872
Alignment:
| Q |
60 |
agagagcaaaaaggagcaacactagaaagcttaaggaagccatgttagtgacttatga-tttggtgcttaaaacacaagagtgactagctccttttatac |
158 |
Q |
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| T |
10216995 |
agagagcaaaaagaagcagcactaaaaagtttgaggaagccatgttagtgacttatgagtttggtgcataaaacacaagagtgacttgctgcttttatac |
10216896 |
T |
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| Q |
159 |
tagtcgtgatcttagtgaatccac |
182 |
Q |
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| T |
10216895 |
tagtcgtgatcttagtgaaaccac |
10216872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 10243318 - 10243197
Alignment:
| Q |
62 |
agagcaaaaaggagcaacactagaaagcttaaggaagccatgttagtgacttatga-tttggtgcttaaaacacaagagtgactagctccttttatacta |
160 |
Q |
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| T |
10243318 |
agagcaaaaagaagcagcactaggaagtttgaggaagccatgttagtgacttatgagtttggtgcagaaaacacaagagtgacttcctccttttatacta |
10243219 |
T |
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| Q |
161 |
gtcgtgatcttagtgaatccac |
182 |
Q |
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| T |
10243218 |
gtcgtgatctttgtgaatccac |
10243197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 10278158 - 10278075
Alignment:
| Q |
213 |
taccgaagtttgaaattatgtgtggattatggttgagaagttgcatcatttggtgatgttttcattcaatgctagtaacaacatac |
298 |
Q |
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| T |
10278158 |
taccgaagtttgaaatt--gtgtggattatagttgagaagttgcatcatttggtgaggttttcaatcaatactagcaacaacatac |
10278075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 10351194 - 10351126
Alignment:
| Q |
92 |
aaggaagccatgttagtgacttatga-tttggtgcttaaaacacaagagtgactagctccttttatact |
159 |
Q |
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| T |
10351194 |
aaggaagccatcttagtgatttttgagtttggtgcttaaaacacaagagtgactagtttcttttatact |
10351126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 10346456 - 10346320
Alignment:
| Q |
48 |
gagggatgatatagagagcaaaaaggagcaacactagaaagcttaaggaagccatgttagt--gacttatga-tttggtgcttaaaacacaagagtgact |
144 |
Q |
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| T |
10346456 |
gagggatgacaatgagaacaataagaagcaacactaggaagcgaaaggaagccatcttagtttgatttttgagtttggtacataaaacacaagagtgact |
10346357 |
T |
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| Q |
145 |
agctccttttatactagtcgtgatcttagtgaatccac |
182 |
Q |
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|||| | |||||||||||| || |||| |||| ||||| |
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| T |
10346356 |
agctgc-tttatactagtcttggtctttgtgagtccac |
10346320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 10253575 - 10253518
Alignment:
| Q |
209 |
atggtaccgaagtttgaaattatgtgtggattatggttgagaagttgcatcatttggt |
266 |
Q |
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| T |
10253575 |
atggtagcgaagtttgaaattatgagtggattggagttgggaagttgcatcatttggt |
10253518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 10333582 - 10333442
Alignment:
| Q |
48 |
gagggatgatatagagagcaaaaaggagcaacactagaaagcttaaggaagccatgttagt--gacttatga-tttggtgcttaaaacacaagagtga-- |
142 |
Q |
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||||||||| | |||| ||| ||| ||||||||||| |||| ||||||||||| ||||| || || ||| |||||| | |||||||||||||||| |
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| T |
10333582 |
gagggatgacaatgagaacaataagaagcaacactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaaacacaagagtgatg |
10333483 |
T |
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| Q |
143 |
-ctagctccttttatactagtcgtgatcttagtgaatccac |
182 |
Q |
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|||||| |||||||||||||| || |||| |||| ||||| |
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| T |
10333482 |
actagctgcttttatactagtcttggtctttgtgagtccac |
10333442 |
T |
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