View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_19 (Length: 311)
Name: NF18600_low_19
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 46892998 - 46892850
Alignment:
| Q |
35 |
ctagtaatttcatatatctaactaacactcagaaactattgtcgatacaaagaccaaatt-aaaatgatgaaaacataagtaaaaaacaa---tcaaata |
130 |
Q |
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| T |
46892998 |
ctagtaatttcatatatctaac----actcagaaactattgtcgatacaaagaccaaaatgaaaatgatgaaaacataagtaaaaaacaacaatcaaata |
46892903 |
T |
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| Q |
131 |
aagtattggttgagcattgcataattgttgaacaactaagttgtaaaaaacaa |
183 |
Q |
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| T |
46892902 |
aagtattggttgagcattgtataattgttgaacaactaagttgtaaaaaacaa |
46892850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 46892833 - 46892732
Alignment:
| Q |
208 |
caatgtgaattccttacatgttattaaagaacaacaacagccaacaaagagtgacgatgataatgacatgaacgtcacgagtctttatccgtagtacgtt |
307 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46892833 |
caatgtgaatttcttacatgttattaaagaccaacaacagccaacaaagagtgacgatgataatgacatgaacgtcacgagtctttatccgtagtacgtt |
46892734 |
T |
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| Q |
308 |
tc |
309 |
Q |
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|| |
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| T |
46892733 |
tc |
46892732 |
T |
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