View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_20 (Length: 311)

Name: NF18600_low_20
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_20
NF18600_low_20
[»] chr1 (1 HSPs)
chr1 (9-311)||(33317094-33317396)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 33317396 - 33317094
Alignment:
Q  9 gaagaatatgatagtgttaaaatctataattagtaactcgaagctcaatctattttaatattatcatactttcttatgcaaaaagaaagaaattgtttct 108  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33317396 gaagcatatgatagtgttaaaatctataattagtaactcaaagctcaatctattttaatattatcatactttcttatgcaaaaagaaagaaattgtttct 33317297  T
Q  109 ctgttgattctatgacaaaaggaaggaaagtaagaaactgtaagagatgacaaagacattacagtatcactagaatctcttaagttctgatcgacggact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33317296 ctgttgattctatgacaaaaggaaggaaagtaagaaactgtaagagatgacaaagacattacagtatcactagaatctcttaagttctgatcgacggact 33317197  T
Q  209 caaattctctatggtcggtaaaccctgcaattgttgtcaatgatcgtgatcgttggataatgatcagacgactctgacttcatcaagtagagtttaaaat 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33317196 ccaattctctatggtcggtaaaccctgcaattgttgtcaatgatcgtgatcgttggaaaatgatcagacgactctgacttcatcaagtagagtttaaaat 33317097  T
Q  309 aca 311  Q
    |||    
T  33317096 aca 33317094  T

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