View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_21 (Length: 300)

Name: NF18600_low_21
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_21
NF18600_low_21
[»] chr7 (2 HSPs)
chr7 (1-284)||(40749202-40749485)
chr7 (3-139)||(44150833-44150969)
[»] chr4 (2 HSPs)
chr4 (30-284)||(22085566-22085823)
chr4 (3-108)||(30518181-30518286)
[»] chr1 (10 HSPs)
chr1 (3-284)||(28496139-28496423)
chr1 (1-127)||(31644089-31644215)
chr1 (10-139)||(12774894-12775023)
chr1 (9-139)||(12804550-12804680)
chr1 (30-108)||(36989328-36989406)
chr1 (1-271)||(42286942-42287212)
chr1 (1-103)||(50788850-50788952)
chr1 (207-283)||(31644298-31644374)
chr1 (219-283)||(4160187-4160251)
chr1 (30-94)||(4160379-4160443)
[»] chr8 (4 HSPs)
chr8 (1-127)||(5788754-5788880)
chr8 (1-108)||(33186723-33186830)
chr8 (231-283)||(33186548-33186600)
chr8 (230-283)||(5788983-5789036)
[»] chr2 (4 HSPs)
chr2 (30-112)||(40040773-40040855)
chr2 (3-94)||(42898300-42898391)
chr2 (3-124)||(38895890-38896011)
chr2 (219-283)||(42898111-42898175)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 40749485 - 40749202
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749485 tatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 40749386  T
Q  101 ttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749385 ttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttc 40749286  T
Q  201 cttggttctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 284  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749285 cttggttctttgttggatctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 40749202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 44150833 - 44150969
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    ||||| ||||||||||| |||||   |||||| |||||||| |||||||| |||||| | || || ||||| ||||| |||||||||||||| |||||||    
T  44150833 tattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatttcttctcaccatgtt 44150932  T
Q  103 ttctactaaaatgtttctttattccggtgaggtcacc 139  Q
    | |  ||||||||||| || ||||| || ||||||||    
T  44150933 tgcggctaaaatgttttttgattccagtaaggtcacc 44150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 22085566 - 22085823
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctactaaaatgtttctttattccgg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |    
T  22085566 tgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcctg 22085665  T
Q  130 tgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttcc---ttggttctttgttggacctttgctt 226  Q
    | |  || ||||| || ||||  |  || ||||| |||||||| ||||| || || |  || ||||| || |   || | |||||||| |  ||||||||    
T  22085666 tcaaatctcccaaagctctagaaggttcatggtgcacacaagtcttctcaggacacacataaaccttctttcgaatttgatctttgtttgctctttgctt 22085765  T
Q  227 tagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 284  Q
     |||||||||||||||||||| ||||  | ||||||||| | |||||| |||||||||    
T  22085766 cagcttccatggtaggttgtgtcctcgccgatgaagctgcaaattctggtctctttgg 22085823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 30518181 - 30518286
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    ||||||||||||||||| ||||| | ||||||||||||||| || ||||| |||||    || || ||||| ||||||||||| ||||| || ||||| |    
T  30518181 tattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccacttcttttcaccatgct 30518280  T
Q  103 ttctac 108  Q
    ||||||    
T  30518281 ttctac 30518286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 28496139 - 28496423
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||| |||||||| || || |    
T  28496139 tattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcaccgtgct 28496238  T
Q  103 ttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttcct 202  Q
    |||||||||| || || ||||| || ||||||||||| |  || || |  | ||| ||||||||||| || ||||| || |||||||| | |||| | ||    
T  28496239 ttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacacaggtcttctctggacagatgta-aactttcttct 28496337  T
Q  203 tggt----tctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 284  Q
    || |    ||||||||||| || ||  | ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||||||    
T  28496338 tgataacatctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttgg 28496423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 31644089 - 31644215
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||  |||| || ||||||||||| |||||||| ||||| |||||    
T  31644089 tatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccattttttctcaccatg 31644188  T
Q  101 ttttctactaaaatgtttctttattcc 127  Q
    |||||||||| |||||||||| |||||    
T  31644189 ttttctactataatgtttcttaattcc 31644215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 12775023 - 12774894
Alignment:
Q  10 tagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctact 109  Q
    |||||||||| |||||||  ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||      
T  12775023 tagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccattttttctcaccatgctttctaaa 12774924  T
Q  110 aaaatgtttctttattccggtgaggtcacc 139  Q
    | | |||||||| ||||| |||||||||||    
T  12774923 atagtgtttcttaattccagtgaggtcacc 12774894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 12804550 - 12804680
Alignment:
Q  9 ctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctac 108  Q
    ||||||||||| || ||||  ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||||||     
T  12804550 ctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacatttccactttttctcaccatgctttctag 12804649  T
Q  109 taaaatgtttctttattccggtgaggtcacc 139  Q
     ||| || ||||| ||||| |||||||||||    
T  12804650 aaaagtgcttcttaattccagtgaggtcacc 12804680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 36989406 - 36989328
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctac 108  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || ||||| ||||| |||||||    
T  36989406 tgagctttccaatcagattgaacagcatatttcttagaacacttatcacatttccactttttctcaccatgctttctac 36989328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 42287212 - 42286942
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||||||||||||| || ||||  || |||||||| ||||||||||| ||||||||||| || || || ||||| ||||| |||||||| || ||    
T  42287212 tatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccacttcttctcaccgtg 42287113  T
Q  101 ttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcagatgtatacctttttc 200  Q
     || | |   ||||| || || ||||| || || || || || || || |  | |||||| ||||| || ||   ||| || || |  || |||||| ||    
T  42287112 cttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtgggctcaggacacaaataaacctttctc 42287013  T
Q  201 cttggttctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagatt 271  Q
    ||||| |||||||||||| |||||||||||||||| || || ||||| |||||||||||||| ||||||||    
T  42287012 cttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagatt 42286942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50788850 - 50788952
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    |||||||||| || ||||| || ||||  || || ||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| |||||    
T  50788850 tatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagcacttatcacacttccatttcttctcaccatg 50788949  T
Q  101 ttt 103  Q
    |||    
T  50788950 ttt 50788952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 31644298 - 31644374
Alignment:
Q  207 tctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 283  Q
    |||||||||  ||||||||| | ||||||||||||||| || ||||| ||||| ||||| || || |||||||||||    
T  31644298 tctttgttgttcctttgcttcaacttccatggtaggttatgtcctctcctatgtagctgtaggttttgatctctttg 31644374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 4160251 - 4160187
Alignment:
Q  219 ctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 283  Q
    |||| ||||||||||||||| |  || || |||||  |||||||||||||||| |||||||||||    
T  4160251 cttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttg 4160187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 4160443 - 4160379
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctc 94  Q
    |||||||||||||| || ||||||||||||   || ||||| || ||||||||||| ||||||||    
T  4160443 tgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccacttcttctc 4160379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5788754 - 5788880
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    ||||||||||||| ||||| ||||| |  ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| |||||    
T  5788754 tatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaacacttttcacatttccacttcttctcaccatg 5788853  T
Q  101 ttttctactaaaatgtttctttattcc 127  Q
     |||||   ||| |||||||| |||||    
T  5788854 ctttctggaaaagtgtttcttgattcc 5788880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33186830 - 33186723
Alignment:
Q  1 tatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatg 100  Q
    |||| ||||||| ||||||   ||||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| || ||||| |||||    
T  33186830 tatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctcaccatg 33186731  T
Q  101 ttttctac 108  Q
    ||||||||    
T  33186730 ttttctac 33186723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 33186600 - 33186548
Alignment:
Q  231 ttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 283  Q
    ||||||||||| || || ||||||||||| || ||||||||||||||||||||    
T  33186600 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttg 33186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 5788983 - 5789036
Alignment:
Q  230 cttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 283  Q
    |||||||||||  || ||||||||||| ||||| |||||||| |||||||||||    
T  5788983 cttccatggtaaattatgacctcttctgtgaagttgaagattttgatctctttg 5789036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 40040855 - 40040773
Alignment:
Q  30 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctactaaa 112  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||    
T  40040855 tgagccttccaatcagattgaactgcatatttcttagaacacttatcacacttccacttcttctcaccgtgctttctactaaa 40040773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 42898391 - 42898300
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctc 94  Q
    |||||||| || ||||||||||| | |||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||    
T  42898391 tattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctc 42898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 38895890 - 38896011
Alignment:
Q  3 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgtt 102  Q
    ||||||||||||||||| || || | ||| ||||||||||| |||||||| |||||    || || ||||| ||||||||||| |||||||| || ||||    
T  38895890 tattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttccacttcttctcaccgtgtt 38895989  T
Q  103 ttctactaaaatgtttctttat 124  Q
    | |||| ||| || ||||||||    
T  38895990 tcctacaaaagtgcttctttat 38896011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 42898175 - 42898111
Alignment:
Q  219 ctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 283  Q
    |||||||| | ||||||||| |  ||||| |||||| ||||||| ||||||||||||||||||||    
T  42898175 ctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttg 42898111  T

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