View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_3 (Length: 569)
Name: NF18600_low_3
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 47893845 - 47893422
Alignment:
| Q |
18 |
atggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaattggtcagttgagaaaacatggattggtaa |
117 |
Q |
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| T |
47893845 |
atggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaattggtcagttgagaaaacatggattggtaa |
47893746 |
T |
|
| Q |
118 |
gtcgaaatcttcagtcatgcatgaagtggctatgtctatgtcgtttgaaatgaaatggttggagaatggtacttcctcgtaatgtgttgtgttccactca |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
47893745 |
gtcgaaatcttcagtcatgcatgaagtgtgtatgtctatgtcgtttgaaatgaaatggttggagaatgttacttcctcgtattgtgttgtgttccactca |
47893646 |
T |
|
| Q |
218 |
gggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgtatgagtgagtgagaggagtaattgattgcagtgtgactcgtgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47893645 |
gggattttaaggtttggaattttgatcatggtttcggatggattaaggaatggtgtatgagtgactgagaggagtaattgattgcagtgtgactcgtgta |
47893546 |
T |
|
| Q |
318 |
gctagctagctatatatagaaagaaatgaatatca--atg---ctatgcatgtggtttgaaaaatttaactgtggtttgagtaagtctacttggcttgct |
412 |
Q |
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|||| |||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47893545 |
gcta----gctatatatagaaagaaatgaataatatcatgtgcctatgtatgtggtttgaaaaatttaactgtggtttgagtaagtctacttggcttgct |
47893450 |
T |
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| Q |
413 |
ttataatggtaattattggcttctacct |
440 |
Q |
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| T |
47893449 |
ttataatggtaattattggcttctacct |
47893422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 47893378 - 47893258
Alignment:
| Q |
439 |
ctaaaaatgcaaatgccaaacttatcaatatatatgcaaatcttgtaaacttctcctaaatatccaatttgtcgactttgttttgatggaattgataaac |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47893378 |
ctaaaaatgcaaatgccaaacttatcaatatatatgcaaatcttgtaaacttctcctaaatatccaatttgtcgactttgttttgatggaattgataaac |
47893279 |
T |
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| Q |
539 |
caccctccattttgtcttcat |
559 |
Q |
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| T |
47893278 |
caccctccattttgtcttcat |
47893258 |
T |
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