View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_30 (Length: 259)
Name: NF18600_low_30
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 13083686 - 13083925
Alignment:
| Q |
6 |
atataccattttagatataacattgttacaaactcataaaaagatgtttccctttatcaatggtataaaagtttctcaataagaagaaagacaacgaacg |
105 |
Q |
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| T |
13083686 |
atataccattttagatataacattgttacaaactcataaaaagatgtttccctttatcaatggtataaaagtttgttaataagaagaaagacaacgaacg |
13083785 |
T |
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| Q |
106 |
aaaattcatgattcatgactcaaaacttggttgaaaatgatattaaatcatttcnnnnnnnnnnnctttagtgaacgagattaaatgagaaaatttgatt |
205 |
Q |
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| T |
13083786 |
aaaattcatcattcatgactcaaaacttggttgaaaatgatattaaatcatttc--ttattttttctttagtgaacgagattaaatgagaaaatttgatt |
13083883 |
T |
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| Q |
206 |
ctgcaatatatgattgatacatttgattttattttgtaattc |
247 |
Q |
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| T |
13083884 |
ctacaatatatgattgatacatttgattttattttgtaattc |
13083925 |
T |
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