View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_39 (Length: 233)

Name: NF18600_low_39
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_39
NF18600_low_39
[»] chr5 (16 HSPs)
chr5 (41-233)||(10235941-10236135)
chr5 (42-233)||(30985564-30985758)
chr5 (52-160)||(24663513-24663624)
chr5 (48-201)||(20646404-20646558)
chr5 (41-198)||(24308975-24309136)
chr5 (41-198)||(24364190-24364351)
chr5 (41-168)||(21390612-21390744)
chr5 (41-160)||(22847978-22848102)
chr5 (56-125)||(22987727-22987796)
chr5 (41-132)||(25667290-25667383)
chr5 (1-41)||(20675071-20675111)
chr5 (70-132)||(24878364-24878427)
chr5 (1-41)||(6092728-6092768)
chr5 (52-122)||(24924062-24924131)
chr5 (56-101)||(31533069-31533114)
chr5 (175-232)||(9033633-9033692)
[»] chr3 (23 HSPs)
chr3 (43-231)||(4026402-4026594)
chr3 (41-227)||(1744982-1745171)
chr3 (43-227)||(17132598-17132782)
chr3 (41-147)||(25321132-25321239)
chr3 (48-160)||(45279941-45280054)
chr3 (58-227)||(53589149-53589321)
chr3 (56-190)||(15987499-15987635)
chr3 (56-159)||(27717999-27718105)
chr3 (41-155)||(17439133-17439250)
chr3 (122-231)||(4022830-4022942)
chr3 (41-132)||(14132129-14132222)
chr3 (71-129)||(27304487-27304546)
chr3 (56-153)||(7536155-7536254)
chr3 (58-110)||(15759601-15759653)
chr3 (41-161)||(44450882-44451016)
chr3 (92-160)||(9101733-9101803)
chr3 (56-132)||(12144990-12145070)
chr3 (86-128)||(5495556-5495598)
chr3 (41-125)||(48896038-48896125)
chr3 (52-125)||(22928496-22928568)
chr3 (70-129)||(8737247-8737307)
chr3 (70-129)||(9089485-9089545)
chr3 (1-41)||(30424715-30424755)
[»] chr2 (19 HSPs)
chr2 (56-225)||(30999933-31000103)
chr2 (41-161)||(17636666-17636791)
chr2 (56-227)||(17162032-17162206)
chr2 (41-161)||(17676524-17676649)
chr2 (52-159)||(21498149-21498259)
chr2 (52-160)||(32890356-32890467)
chr2 (41-233)||(16467316-16467511)
chr2 (56-153)||(2481988-2482088)
chr2 (56-129)||(31404120-31404194)
chr2 (56-132)||(29891339-29891416)
chr2 (41-124)||(15438058-15438143)
chr2 (52-132)||(23780659-23780738)
chr2 (1-42)||(29221365-29221406)
chr2 (1-42)||(29334664-29334705)
chr2 (52-139)||(25576671-25576757)
chr2 (1-41)||(44928862-44928902)
chr2 (41-125)||(28760674-28760762)
chr2 (56-125)||(13821945-13822013)
chr2 (41-114)||(19919412-19919487)
[»] chr1 (13 HSPs)
chr1 (43-231)||(13962761-13962953)
chr1 (52-159)||(24633337-24633445)
chr1 (41-163)||(11821789-11821913)
chr1 (56-199)||(33379384-33379529)
chr1 (175-227)||(4521750-4521803)
chr1 (122-231)||(13966297-13966409)
chr1 (67-159)||(44787392-44787486)
chr1 (94-185)||(25018583-25018676)
chr1 (1-41)||(6463310-6463350)
chr1 (84-125)||(20147005-20147046)
chr1 (56-132)||(22533762-22533837)
chr1 (41-129)||(22785113-22785200)
chr1 (1-41)||(14589992-14590032)
[»] chr7 (13 HSPs)
chr7 (43-162)||(7948038-7948158)
chr7 (41-231)||(1545644-1545838)
chr7 (57-220)||(12468828-12468992)
chr7 (40-162)||(28037124-28037250)
chr7 (41-159)||(25621124-25621245)
chr7 (41-231)||(15682734-15682927)
chr7 (52-132)||(18046378-18046458)
chr7 (41-129)||(7524762-7524851)
chr7 (57-132)||(18084292-18084367)
chr7 (40-132)||(41131918-41132012)
chr7 (52-151)||(4978862-4978963)
chr7 (41-161)||(11993933-11994067)
chr7 (56-121)||(9022577-9022642)
[»] scaffold0148 (1 HSPs)
scaffold0148 (41-227)||(22902-23090)
[»] chr4 (13 HSPs)
chr4 (41-227)||(24924764-24924956)
chr4 (41-153)||(12568101-12568217)
chr4 (56-132)||(4697462-4697538)
chr4 (41-233)||(24476195-24476389)
chr4 (146-227)||(18553189-18553270)
chr4 (56-123)||(21823660-21823724)
chr4 (41-108)||(26654146-26654215)
chr4 (1-42)||(55760203-55760244)
chr4 (54-132)||(14632787-14632864)
chr4 (56-129)||(16675097-16675171)
chr4 (91-132)||(12810056-12810097)
chr4 (56-97)||(16288771-16288812)
chr4 (1-41)||(34459799-34459839)
[»] chr8 (24 HSPs)
chr8 (41-170)||(5892546-5892680)
chr8 (41-160)||(22450043-22450165)
chr8 (41-227)||(32352077-32352267)
chr8 (41-227)||(32368738-32368928)
chr8 (41-199)||(41652023-41652185)
chr8 (41-159)||(28291582-28291703)
chr8 (41-132)||(23355444-23355537)
chr8 (54-121)||(19709527-19709594)
chr8 (79-132)||(22455158-22455211)
chr8 (52-132)||(27123664-27123744)
chr8 (58-125)||(10600223-10600290)
chr8 (41-128)||(15340933-15341023)
chr8 (41-128)||(15429998-15430088)
chr8 (41-128)||(15521302-15521392)
chr8 (52-125)||(23818159-23818231)
chr8 (41-227)||(28862486-28862674)
chr8 (69-132)||(13110201-13110265)
chr8 (52-132)||(6017534-6017615)
chr8 (69-124)||(24680834-24680889)
chr8 (41-107)||(11030674-11030742)
chr8 (52-132)||(17983354-17983433)
chr8 (135-231)||(22450173-22450271)
chr8 (91-132)||(24093299-24093340)
chr8 (1-38)||(34776905-34776942)
[»] chr6 (15 HSPs)
chr6 (54-159)||(28712337-28712444)
chr6 (41-163)||(17352660-17352786)
chr6 (41-149)||(19723894-19724006)
chr6 (57-129)||(16793276-16793348)
chr6 (56-125)||(4031071-4031140)
chr6 (41-127)||(6038946-6039028)
chr6 (41-202)||(10163274-10163441)
chr6 (94-202)||(11744458-11744568)
chr6 (98-132)||(9404738-9404772)
chr6 (91-129)||(14763041-14763079)
chr6 (41-129)||(24154179-24154270)
chr6 (41-132)||(13002856-13002950)
chr6 (1-41)||(3516343-3516383)
chr6 (176-233)||(6038859-6038918)
chr6 (176-227)||(16434250-16434302)
[»] scaffold0167 (1 HSPs)
scaffold0167 (41-125)||(10306-10392)
[»] scaffold0320 (1 HSPs)
scaffold0320 (52-125)||(6392-6465)
[»] scaffold0040 (1 HSPs)
scaffold0040 (41-132)||(26932-27023)
[»] scaffold0142 (1 HSPs)
scaffold0142 (52-128)||(20553-20629)
[»] scaffold0039 (1 HSPs)
scaffold0039 (56-132)||(48241-48312)
[»] scaffold0024 (1 HSPs)
scaffold0024 (41-101)||(38917-38979)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-132)||(184428-184505)
[»] scaffold0170 (1 HSPs)
scaffold0170 (56-125)||(1281-1349)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 10236135 - 10235941
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc-gttaaacttt 139  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  10236135 agaaaagagtcacataatgtatgtaatcggatttgttgaaccacttttattttaatgcaatgcaatttacattttctttaagtttctgcatttaaacttt 10236036  T
Q  140 gaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaaacaaac 233  Q
     ||||||||||||||||||| ||| |||  | || ||||||||||  |||| ||||||| |||||| |||||||||||||||||||||| |||||    
T  10236035 taagtcttttacttgcatttgctttactgctttatgtcgaaagacaattattttcatacaaaaacaattttattgatcttgttcataaagcaaac 10235941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 30985564 - 30985758
Alignment:
Q  42 gaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc-gttaaactttg 140  Q
    |||||||||||||  ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||     
T  30985564 gaaaagagtcacaggatgtatgtaatctgatttgtcgaaccacatttattttaatgcaatgcaatttacattttctttaagtttctacatttaaactttt 30985663  T
Q  141 aagtcttttacttgcattttcttcacttatctacgtcgaaagacggt--tatcttcatacaaaacagttttattgatcttgttcataaaacaaac 233  Q
    ||||||||||||||| ||||||||||| || || ||| |||| | ||  ||||||| ||||||||| ||||||| || ||||||||||| |||||    
T  30985664 aagtcttttacttgccttttcttcactgatttatgtcaaaaggcagttatatcttcctacaaaacaattttattcatgttgttcataaagcaaac 30985758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 24663624 - 24663513
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttc--tgcgttaaac-tttgaagtcttt 148  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||  ||  |||||| ||| ||||||||    
T  24663624 acataatgtatgtaatctgatttgttgaaccacctttacattaatgcaatgcaatttactttttctttaagtttccatgttttaaacttttaaagtcttt 24663525  T
Q  149 tacttgcatttt 160  Q
    ||||||||||||    
T  24663524 tacttgcatttt 24663513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 20646558 - 20646404
Alignment:
Q  48 agtcacataatgtatgtaatctgatttgttaaaccacattt-actttaatgcaatgcaatttacattttctttaagtttctgcgtta-aactttgaagtc 145  Q
    |||||||||||||||||||| || ||| || |||||| ||| | || ||||||| | ||||||||||| |||||||||||||| ||  |||||| |||||    
T  20646558 agtcacataatgtatgtaatatggttttttgaaccaccttttaattcaatgcaaagtaatttacattt-ctttaagtttctgcattttaacttttaagtc 20646460  T
Q  146 ttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatacaaa 201  Q
    |||||||| ||||||||||| | ||||  ||||||||||  |||||||||||||||    
T  20646459 ttttacttacattttcttcattgatctctgtcgaaagacatttatcttcatacaaa 20646404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 24309136 - 24308975
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  || ||| |||||||||||||||||  ||| || ||||| ||||| ||||||||||||| |||||||||||||| | ||  ||||||    
T  24309136 agaaaagagtcatacagaatatatgtaatctgatttgtcgaactacctttacattaatacaatgcaatttaccttttctttaagtttttacgttttaaac 24309037  T
Q  137 tttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac 198  Q
    ||| ||||||||||||||||||| ||| |||| |||  |||||| ||| ||| | |||||||    
T  24309036 ttttaagtcttttacttgcatttcctttacttttctctgtcgaaggacagttgttttcatac 24308975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 24364190 - 24364351
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  || ||| |||||||||||||||||  ||| || ||||| ||||| ||||||||||||| |||||||||||||| | ||  ||||||    
T  24364190 agaaaagagtcatacagaatatatgtaatctgatttgtcgaactacctttacattaatacaatgcaatttaccttttctttaagtttttacgttttaaac 24364289  T
Q  137 tttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac 198  Q
    ||| ||||||||||||||||||| ||| |||| |||  |||||| ||| ||| | |||||||    
T  24364290 ttttaagtcttttacttgcatttcctttacttttctctgtcgaaggacagttgttttcatac 24364351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 21390744 - 21390612
Alignment:
Q  41 agaaaagagtc--acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc--gttaaac 136  Q
    |||||||||||  ||||||| || ||||  ||||||||  |||||| ||||| |||||||||||| |||||| ||||||||||||||||||   ||||||    
T  21390744 agaaaagagtccgacataatatacgtaagttgatttgtcgaaccacctttacattaatgcaatgcgatttaccttttctttaagtttctgcattttaaac 21390645  T
Q  137 -tttgaagtcttttacttgcattttcttcactt 168  Q
     ||| ||||||||||||||||||| ||| ||||    
T  21390644 ttttaaagtcttttacttgcatttcctttactt 21390612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 22848102 - 22847978
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  |||||| | |||||||||||||||  || ||| ||||  ||||||||||||||||||| |||||||||||||||| ||  |||| |    
T  22848102 agaaaagagtcagtcataatttttgtaatctgatttgtcgaatcacctttatattaatgcaatgcaatttaccttttctttaagtttctccgttttaacc 22848003  T
Q  137 tttgaa-gtcttttacttgcatttt 160  Q
    ||| || ||||||||||||||||||    
T  22848002 ttttaacgtcttttacttgcatttt 22847978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 22987796 - 22987727
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||||||||| |||  |||||| ||||| ||||||||||||||||||| ||| ||||||||||    
T  22987796 aatgtatgtaatctgatatgtcgaaccacctttacattaatgcaatgcaatttacctttactttaagttt 22987727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 25667290 - 25667383
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||  || ||||| |||||| || |||||  |||||| | ||||||||||||||||| ||||| |||||||||||||| ||||||    
T  25667290 agaaaagagtcatacaaaatgtgtgtaatttgttttgtcgaaccacctatactttaatgcaatgcagtttaccttttctttaagtttatgcgtt 25667383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20675071 - 20675111
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  20675071 attatagtaccctgcccattgggggcccattgccatcccta 20675111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 24878427 - 24878364
Alignment:
Q  70 gatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||| ||||||| |||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  24878427 gatttgtcaaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcgtt 24878364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6092768 - 6092728
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  6092768 attatagtaccctgcccattggggggccattgccatcccta 6092728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 24924062 - 24924131
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaag 122  Q
    ||||||||||||||| |||||||| || ||| |||||| ||||||||| |||| ||||| ||| |||||||    
T  24924062 acataatgtatgtaaactgatttg-tagaccgcatttattttaatgcattgcattttacttttcctttaag 24924131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 31533069 - 31533114
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaat 101  Q
    |||||||||||||||||||||  |||||| ||||| ||||||||||    
T  31533069 aatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 31533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 9033692 - 9033633
Alignment:
Q  175 gtcgaaagacggttatcttcata--caaaacagttttattgatcttgttcataaaacaaa 232  Q
    ||||||||||  |||| ||||||  ||||||| ||||||| |||||||||||||||||||    
T  9033692 gtcgaaagacacttatattcatattcaaaacatttttattcatcttgttcataaaacaaa 9033633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 4026402 - 4026594
Alignment:
Q  43 aaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttcttt-aagtttctgcg-ttaaactttg 140  Q
    |||||||||||||||| |||||||||| ||||||  |||||| |||||  ||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  4026402 aaaagagtcacataatatatgtaatctaatttgtcgaaccacctttacactaatgcaatgcaatttacattttctttaaagtttatgcgtttaaactttg 4026501  T
Q  141 aagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac--aaaacagttttattgatcttgttcataaaacaa 231  Q
    | ||||||||||||||||||||| ||||||||  |||||||||   ||||||||||||  ||||||||||| ||  |||||||||||||||||    
T  4026502 atgtcttttacttgcattttctttacttatctctgtcgaaagagaattatcttcatacaaaaaacagttttcttcttcttgttcataaaacaa 4026594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 1745171 - 1744982
Alignment:
Q  41 agaaaagagtcacataatgtatgtaa-tctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt-aaactt 138  Q
    ||||| |||||||||||||||| ||| ||||||||||  || ||| ||||| ||||||||||||||||||| |||| || ||||||||||||| ||||||    
T  1745171 agaaacgagtcacataatgtatttaaatctgatttgtctaatcacctttacattaatgcaatgcaatttaccttttgttcaagtttctgcgtttaaactt 1745072  T
Q  139 tgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaa 227  Q
    | |||| |||||||||||||||||| ||||||||  ||||||||||  |||||||||||| ||||||||||| || |||||||| |||||    
T  1745071 ttaagtattttacttgcattttctttacttatctctgtcgaaagacaattatcttcatacaaaaacagttttcttcatcttgtttataaa 1744982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 17132782 - 17132598
Alignment:
Q  43 aaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtta-aactttga 141  Q
    |||| |||||||||||||||||||  ||||||||  |||||| ||||||||||||||||| ||||||| ||||||||||||| |||| ||  |||||| |    
T  17132782 aaaaaagtcacataatgtatgtaacttgatttgtcgaaccacctttactttaatgcaatgaaatttac-ttttctttaagtt-ctgcattttaactttta 17132685  T
Q  142 agtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaa 227  Q
    ||||||||||||||||||||| || | || || |||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||    
T  17132684 agtcttttacttgcattttctacattgatttatgtcgaaagacagttatcttcatacaaaaatagttttattcatcttgttcataaa 17132598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 25321239 - 25321132
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaacttt 139  Q
    |||||||||||||| ||| ||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  25321239 agaaaagagtcacaaaatatatgtaatctgatttgtcaaaccatatttacattaatgcaatgtaatttacattttctttaagtttctgcgtttaaacttt 25321140  T
Q  140 gaagtctt 147  Q
     |||||||    
T  25321139 taagtctt 25321132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 45279941 - 45280054
Alignment:
Q  48 agtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaag-tttctgcg-ttaaactttgaagtc 145  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||| ||| |||| ||||||||| |||||    
T  45279941 agtcacaaaatgtatgtaatctgatttgtcgaaccacatctactttaatgcaatgcaatttac-ttttatttaagttttttgcgtttaaacttttaagtc 45280039  T
Q  146 ttttacttgcatttt 160  Q
    |||||||||||||||    
T  45280040 ttttacttgcatttt 45280054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 53589149 - 53589321
Alignment:
Q  58 tgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaactttgaagtcttttacttgca 156  Q
    |||||||||||||||||||  |||||| |||||   ||||||||||||||| | |||||||||||||||| || ||||||||| ||||| |||||||| |    
T  53589149 tgtatgtaatctgatttgtcgaaccacttttacacaaatgcaatgcaatttgccttttctttaagtttctacgtttaaactttaaagtcatttacttgaa 53589248  T
Q  157 ttttcttcacttatctacgtcgaaagacggttatcttcatacaaaaca--gttttattgatcttgttcataaa 227  Q
    | ||||| | | ||||  |||||||| |  |||||||||||||||| |  |||||||| ||||||||||||||    
T  53589249 tattctttattgatctctgtcgaaaggcaattatcttcatacaaaaaatggttttattcatcttgttcataaa 53589321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 15987635 - 15987499
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgt--taaactttgaagtcttttactt 153  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||||||  ||| ||||||| |||||| || ||  |||||||| |||||||||||||    
T  15987635 aatgtatgtaatctgatttgtcgaaccacatttacattaatgcaatgcaaaataccttttcttaaagtttatgtgttctaaacttttaagtcttttactt 15987536  T
Q  154 gcattttcttcacttatctacgtcgaaagacggttat 190  Q
    |||||| ||| |||| || | || ||||||| |||||    
T  15987535 gcatttcctttacttttccatgttgaaagacagttat 15987499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 27717999 - 27718105
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac-tttgaagtcttttact 152  Q
    ||||||||||||||||||| |  |||||| ||||| ||||||||||||||||||| |||||||||||||| || |  |||||| ||||||||||||||||    
T  27717999 aatgtatgtaatctgatttatcgaaccacctttacattaatgcaatgcaatttaccttttctttaagtttttgtgttttaaacttttgaagtcttttact 27718098  T
Q  153 tgcattt 159  Q
    |||||||    
T  27718099 tgcattt 27718105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 17439133 - 17439250
Alignment:
Q  41 agaaaagagtcacataa--tgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc-gttaaact 137  Q
    |||||||||||| ||||  | |||||||||||||||||  ||| |||||||| ||||||||||||||||||| |||||||||||||||| |  ||||||     
T  17439133 agaaaagagtcatataaaatatatgtaatctgatttgtcgaactacatttacattaatgcaatgcaatttaccttttctttaagtttctacatttaaacg 17439232  T
Q  138 ttgaagtcttttacttgc 155  Q
    || |||||||||||||||    
T  17439233 ttaaagtcttttacttgc 17439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 4022830 - 4022942
Alignment:
Q  122 gtttctgcgtt-aaactttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac--aaaacagttttattgatctt 218  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||  ||| ||||||  ||||||||||||  ||||| ||||| || |||||    
T  4022830 gtttctgcgtttaaacttttaagtcttttacttgcattttctttacttatctctgtccaaagacacttatcttcatacaaaaaacggttttcttcatctt 4022929  T
Q  219 gttcataaaacaa 231  Q
    |||||||||||||    
T  4022930 gttcataaaacaa 4022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 14132129 - 14132222
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||  || ||||||||||||||||||| || |||||   |||| |||||||||||||||| || |||||| ||||||| ||||||    
T  14132129 agaaaagagtcatacaaaatgtatgtaatctgatttattgaaccatcgttacattaatgcaatgcaattaaccttttctgtaagtttatgcgtt 14132222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 27304487 - 27304546
Alignment:
Q  71 atttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||| ||||||| |||| ||| |||||||||||||||| |||||||||||||||||||    
T  27304487 atttgtcaaaccacttttatttttaatgcaatgcaatttatattttctttaagtttctgc 27304546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 7536155 - 7536254
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc--gttaaactttgaagtcttttactt 153  Q
    |||||||||||| ||||||||  || ||| ||||| |||||||||| ||||||||  || |||||||||| |||   ||||||||| || ||||||||||    
T  7536155 aatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaatttacccttcctttaagtttatgcattttaaacttttaaatcttttactt 7536254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 15759653 - 15759601
Alignment:
Q  58 tgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttac 110  Q
    ||||||||||||||||||| ||||||| ||||  ||||| |||||||||||||    
T  15759653 tgtatgtaatctgatttgtcaaaccacctttatcttaatacaatgcaatttac 15759601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 44450882 - 44451016
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattt----------tctttaagtttctg 128  Q
    ||||||||||||||||||||||||||  ||||||||  |||||   |||| ||  ||||||||| |||||||||||          ||||||||||||||    
T  44450882 agaaaagagtcacataatgtatgtaacttgatttgtcgaaccatcattacattcaaatgcaatgtaatttacatttctttcagttttctttaagtttctg 44450981  T
Q  129 cg-ttaaactttgaagtcttt-tacttgcattttc 161  Q
    || ||||||||| |||||||| |||||||||||||    
T  44450982 cgtttaaacttttaagtctttatacttgcattttc 44451016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 9101733 - 9101803
Alignment:
Q  92 ttaatgcaatgcaatttacattttctttaagtttctgc--gttaaactttgaagtcttttacttgcatttt 160  Q
    ||||||||||||||||||  ||||||||||||| ||||   ||||||||| ||||| ||||||| ||||||    
T  9101733 ttaatgcaatgcaatttaacttttctttaagttgctgctttttaaacttttaagtcatttacttacatttt 9101803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 12145070 - 12144990
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttac----attttctttaagtttctgcgtt 132  Q
    |||||||||||||| |||||| | ||||| ||||| ||||| |||||||||||||     |||||||||||||| ||||||    
T  12145070 aatgtatgtaatctaatttgtcataccacctttacattaatacaatgcaatttaccctttttttctttaagtttatgcgtt 12144990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 5495598 - 5495556
Alignment:
Q  86 tttactttaatgcaatgcaatttacattttctttaagtttctg 128  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  5495598 tttattttaatgcaatgcaatttatcttttctttaagtttctg 5495556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 48896125 - 48896038
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttac--tttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||||  |||||||||||||| ||| |||||  |||||| |||||  || ||||||||| |||||||| |||||||||||||    
T  48896125 agaaaagagtcatacataatgtatgtaaactggtttgtcgaaccacctttacatttaaatgcaatgaaatttaca-tttctttaagttt 48896038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 22928568 - 22928496
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||||||| |||||||| || ||||| |||  || ||||||||||| |||| |||| ||||||||||    
T  22928568 acataatgtatgtaaactgatttg-tagaccacttttctttcaatgcaatgcattttaaatttgctttaagttt 22928496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 8737247 - 8737307
Alignment:
Q  70 gatttgttaaaccacatttactttaa-tgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||||| |||||| |||| ||||| ||||||||||||||  |||||||||| |||||||    
T  8737247 gatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgc 8737307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 9089485 - 9089545
Alignment:
Q  70 gatttgttaaaccacatttactttaa-tgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||||| |||||| |||| ||||| ||||||||||||||  |||||||||| |||||||    
T  9089485 gatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgc 9089545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30424755 - 30424715
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  30424755 attatagtaccctgtccattgagggcccattgccatcccta 30424715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 30999933 - 31000103
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt-aaactttgaagtcttttacttg 154  Q
    |||||||||||||||||||||  ||| || ||||||||| |||||||||||||| |||||||||| |||| ||| || ||||||| ||||||||||||||    
T  30999933 aatgtatgtaatctgatttgtcgaactacttttactttagtgcaatgcaatttaaattttctttatgtttatgcatttaaacttttaagtcttttacttg 31000032  T
Q  155 cattttcttcacttatctacgtcgaaagacggttatcttcatacaaaacagttttattgatcttgttcata 225  Q
    ||||||||||||| || || ||||||||||  |||||||||||||||| ||||||||  ||||||||||||    
T  31000033 cattttcttcactgatttatgtcgaaagacaattatcttcatacaaaatagttttatccatcttgttcata 31000103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 17636791 - 17636666
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  || |||||||||||||||||||||  |||||| ||||| ||||||||| ||||||||| |||||||||||||||||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaac 17636692  T
Q  137 -tttgaagtcttttacttgcattttc 161  Q
     ||| |||||||||||||||||||||    
T  17636691 ttttaaagtcttttacttgcattttc 17636666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 17162032 - 17162206
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaac-tttgaagtcttttactt 153  Q
    |||||||||||||||||||||  | |||| ||||  ||||||||||||||||||| ||| |||||||||| || | |||||| ||| |||||||||||||    
T  17162032 aatgtatgtaatctgatttgtcgagccacctttatattaatgcaatgcaatttacctttcctttaagtttttgtgtttaaacttttaaagtcttttactt 17162131  T
Q  154 gcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaa 227  Q
    ||||||| || |||| |||  |||||||| |  |||||||||||| ||||||||||| || ||||| ||||||||    
T  17162132 gcattttatttacttgtctctgtcgaaaggcaattatcttcatacaaaaacagttttcttcatcttattcataaa 17162206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 17676649 - 17676524
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  || |||||||||||||||||||||  |||||| ||||| ||||||||| ||||||||| |||||||||||||| ||||  ||||||    
T  17676649 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaaggcaatttaccttttctttaagtttatgcgttttaaac 17676550  T
Q  137 -tttgaagtcttttacttgcattttc 161  Q
     ||| |||||||||||||||||||||    
T  17676549 ttttaaagtcttttacttgcattttc 17676524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 21498149 - 21498259
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaactttgaagtc-ttt 148  Q
    |||||| ||||||||||||||||||  |||||| ||||| ||||||||||||||||||| ||||||||||||||  |||  ||||||||| ||||| |||    
T  21498149 acataacgtatgtaatctgatttgtcgaaccacttttacattaatgcaatgcaatttaccttttctttaagtttacgcgttttaaacttttaagtctttt 21498248  T
Q  149 tacttgcattt 159  Q
    |||||||||||    
T  21498249 tacttgcattt 21498259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 32890467 - 32890356
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac-tttgaagtcttt 148  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||||||||| ||||||  |||||||| ||||| ||||  |||||| ||| ||||||||    
T  32890467 acataatgtatgtaatcttatttgtcaaaccacttttacattaatgcaatgaaatttatcttttcttttagtttatgcgttttaaacttttaaagtcttt 32890368  T
Q  149 tacttgcatttt 160  Q
    ||||||||||||    
T  32890367 tacttgcatttt 32890356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 16467316 - 16467511
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc-gttaaacttt 139  Q
    |||||||||||||| ||| | |||||  ||||||||  ||| || ||||||||||||||||||||||||| |||||||| || |||| |  || |||||     
T  16467316 agaaaagagtcacaaaatatttgtaacttgatttgtcgaacaacttttactttaatgcaatgcaatttactttttcttt-aggttctccattttaacttc 16467414  T
Q  140 gaagtcttttacttgcattttcttcactta-tctacgtcgaaagacggttatcttcatac--aaaacagttttattgatcttgttcataaaacaaac 233  Q
    ||| ||||||||||||||| ||  || | | | |   ||||||||| |||||| ||||||  |||||||||||||| ||||||||||||||||||||    
T  16467415 gaaatcttttacttgcattgtccacattgattttttatcgaaagacagttatcgtcatacaaaaaacagttttattcatcttgttcataaaacaaac 16467511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 2482088 - 2481988
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt--aaac-tttgaagtcttttact 152  Q
    |||||||||||| ||||||||  |||||  ||||| ||||||||||||||||||| |||||||||| ||| ||||||  |||| ||| ||||||||||||    
T  2482088 aatgtatgtaatttgatttgtcgaaccatctttacattaatgcaatgcaatttaccttttctttaattttatgcgtttaaaacttttaaagtcttttact 2481989  T
Q  153 t 153  Q
    |    
T  2481988 t 2481988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 31404120 - 31404194
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacattt-actttaatgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||||||||  ||||||||  |||||| ||| | |||||||||||||||||||| ||||||||||||||||||    
T  31404120 aatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgc 31404194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 29891339 - 29891416
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaattta-cattttctttaagtttctgcgtt 132  Q
    ||||||||||  ||||| |||  ||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||    
T  29891339 aatgtatgtacactgatatgtcgaaccacatttattttaatgcaatgcaatttatctttttctttaagtttttgcgtt 29891416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 15438058 - 15438143
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtt 124  Q
    ||||||||||||  || |||||||||||| ||||||||  ||||||  |||| |||||| |||||||||||| ||| |||||||||    
T  15438058 agaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccattacattaatgtaatgcaatttacctttcctttaagtt 15438143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 23780738 - 23780659
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||||| || |||||| | ||||| |||||||| ||||||||||| ||||||||| |||||||||| ||||||    
T  23780738 acataatgtatgtaaacttatttgt-agaccac-tttacttttaatgcaatgcattttacatttcctttaagtttatgcgtt 23780659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29221365 - 29221406
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatccctag 42  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  29221365 attatagtaccctgtccattgggggcccattgccatccctag 29221406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29334664 - 29334705
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatccctag 42  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  29334664 attatagtaccctgtccattgggggcccattgccatccctag 29334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 25576757 - 25576671
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcgttaaacttt 139  Q
    |||||||||||| || ||||||| ||| ||||| |||||||| ||||||||||| ||| ||||| |||||||||| ||| |||||||||    
T  25576757 acataatgtatgaaaactgattt-ttagaccac-tttacttttaatgcaatgcatttttcatttcctttaagtttatgctttaaacttt 25576671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44928862 - 44928902
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  44928862 attatagtaccctgcctattggggacccattgtcatcccta 44928902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 28760674 - 28760762
Alignment:
Q  41 agaaaagagtcacata--atgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattttctttaagttt 125  Q
    |||||||||||| |||  |||||||||| |||||||||  |||||| ||||| ||  |||||||  || ||||||||||||||||||||    
T  28760674 agaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccacctttacatttaaatgcaacacattttacattttctttaagttt 28760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 13822013 - 13821945
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||| ||||||||| | ||||  |||| |||||||||||||| ||||| ||| ||||||||||    
T  13822013 aatgtatgtaaactgatttgt-agaccatctttattttaatgcaatgcattttacttttcctttaagttt 13821945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 19919487 - 19919412
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattt 114  Q
    ||||||||||||||||||||||||||  || |||||  ||| || ||||| ||  |||| ||||||||||||||||    
T  19919487 agaaaagagtcacataatgtatgtaacttgttttgtctaactacctttacattcaaatgaaatgcaatttacattt 19919412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 13962953 - 13962761
Alignment:
Q  43 aaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttcttt-aagtttctgcg-ttaaactttg 140  Q
    |||||||||||||||| |||||||| | ||||||  |||||| |||||  ||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  13962953 aaaagagtcacataatatatgtaatttaatttgtcgaaccacctttacactaatgcaatgcaatttacattttctttaaagtttatgcgtttaaactttg 13962854  T
Q  141 aagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac--aaaacagttttattgatcttgttcataaaacaa 231  Q
    | ||||||||||||||||||||| ||||||||  |||||||||   ||||||||||||  ||||| ||||| || ||||||||||||||||||    
T  13962853 atgtcttttacttgcattttctttacttatctctgtcgaaagagaattatcttcatacaaaaaacggttttcttcatcttgttcataaaacaa 13962761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 24633337 - 24633445
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt-aaactttgaagtctttta 150  Q
    |||||||||||||||||||||||||  |||||  ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  24633337 acataatgtatgtaatctgatttgtagaaccaactttacattaatgtaatgcaatttacattttctttaagtttctgcgttaaaactttaaagtctttta 24633436  T
Q  151 cttgcattt 159  Q
    |||||||||    
T  24633437 cttgcattt 24633445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 11821913 - 11821789
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattttctttaagtttctgcgttaaactt 138  Q
    |||||||||||||| |||||||||||  |||||| |  |||||| ||||| ||  ||||||||||||||||||||| |||||||||| ||||||||||||    
T  11821913 agaaaagagtcacaaaatgtatgtaacttgatttatcgaaccacctttacattcaaatgcaatgcaatttacattt-ctttaagtttttgcgttaaactt 11821815  T
Q  139 tgaagt-cttttacttgcattttctt 163  Q
    | ||||  ||||||||||||||||||    
T  11821814 ttaagtatttttacttgcattttctt 11821789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 33379384 - 33379529
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaactttgaagtcttttactt 153  Q
    |||| |||||||||||||||| ||||||  ||||| ||||||||||||||| ||| |||||||||||||| || |  ||||||||| ||||||||||| |    
T  33379384 aatgaatgtaatctgatttgtcaaaccagctttacattaatgcaatgcaatctacgttttctttaagtttatgtgttttaaacttttaagtcttttacat 33379483  T
Q  154 gcattttcttcacttatctacgtcgaaagacggttatcttcataca 199  Q
    |||||||||  | || |||  ||||||||||  |||| ||||||||    
T  33379484 gcattttctgaatttttctctgtcgaaagacaattattttcataca 33379529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 4521750 - 4521803
Alignment:
Q  175 gtcgaaagacggttatcttcat-acaaaacagttttattgatcttgttcataaa 227  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  4521750 gtcgaaagacggttatcttcatcacaaaacagttttattcatcttgttcataaa 4521803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 13966409 - 13966297
Alignment:
Q  122 gtttctgcgtt-aaactttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatacaaaaca--gttttattgatctt 218  Q
    ||||||||||| ||||||| || |||||||||||||||||||| ||||||||  | | ||||||  || ||||||||||||| |  ||||| || |||||    
T  13966409 gtttctgcgtttaaacttttaaatcttttacttgcattttctttacttatctctggccaaagacacttgtcttcatacaaaaaatggttttcttcatctt 13966310  T
Q  219 gttcataaaacaa 231  Q
    |||||||||||||    
T  13966309 gttcataaaacaa 13966297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 44787392 - 44787486
Alignment:
Q  67 tctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaactttgaagtcttttacttgcattt 159  Q
    ||||||||||  ||||||  |||| ||| ||||||||||||||| |||||||||||||||||||  || |||||| ||||||| ||||| |||||    
T  44787392 tctgatttgtcgaaccaccgttacattattgcaatgcaatttaccttttctttaagtttctgcgtttttaacttttaagtcttatactttcattt 44787486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 25018676 - 25018583
Alignment:
Q  94 aatgcaatgcaatttacattttctttaagtttctgcg-ttaaactttgaagtc-ttttacttgca-ttttcttcacttatctacgtcgaaagacg 185  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||| ||||||||||| ||||||| |||| | | ||||||||||||    
T  25018676 aatgcaatgcaatttaccttt-ctttaagtttctgcgtttaaacttttaagtctttttacttgcatttttctttacttctttccgtcgaaagacg 25018583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6463350 - 6463310
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  6463350 attatagtaccctgcccattgggggcccgttgccatcccta 6463310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 20147046 - 20147005
Alignment:
Q  84 catttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    |||||| |||||||||||||| ||||| ||||||||||||||    
T  20147046 catttattttaatgcaatgcattttaccttttctttaagttt 20147005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 22533762 - 22533837
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||| ||||||||| | ||||| |||||||| ||||||||||| ||||| ||| |||||||||| ||||||    
T  22533762 aatgtatgtaaactgatttgt-agaccac-tttacttttaatgcaatgcattttacttttcctttaagtttgtgcgtt 22533837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 22785113 - 22785200
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacattt-actttaatgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||||||||||| |||||||||||  ||||||| | |||||| ||| | || ||||| |||||||||||| ||| |||||||||||||    
T  22785113 agaaaagagtcacaaaatgtatgtaacttgatttggtgaaccacctttaaattcaatgc-atgcaatttaca-tttgtttaagtttctgc 22785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14589992 - 14590032
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||||||||||||||| ||||||| | ||||||||||||||    
T  14589992 attatagtaccctgcccattggggacgcattgccatcccta 14590032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 7948038 - 7948158
Alignment:
Q  43 aaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaactttga 141  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  7948038 aaaagagtcacaaaatgtatgtaatctgatttgtcaaaccatatttacattaatgcaatgcaatttaccttttctttaagtttctgcgtttaaactttta 7948137  T
Q  142 agtcttttacttgcattttct 162  Q
    |||||||||||||||||||||    
T  7948138 agtcttttacttgcattttct 7948158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 1545644 - 1545838
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaact 137  Q
    ||||||||||||  || ||||||| |||||||||||||  |||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||    
T  1545644 agaaaagagtcatacaaaatgtatataatctgatttgtcgaaccacatttacattaatgcaatgcaatttaccttttctttaattttctgcgtttaaact 1545743  T
Q  138 ttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaaacaa 231  Q
    || ||||||||||||||||||| ||| ||||||||   |||| || | ||||||||||||| |||||| |||| || ||||| ||||||||||||    
T  1545744 tttaagtcttttacttgcatttcctttacttatctctatcgagaggcagttatcttcatacaaaaacaattttcttcatcttattcataaaacaa 1545838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 12468992 - 12468828
Alignment:
Q  57 atgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaactttgaagtcttttacttgc 155  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||||||||| ||||    
T  12468992 atgtatgtaatctgatttgtcgaaccacatttactttaatgcaatgcaatttac-ttttctttaagtttatgcgtttaaatttttaagtcttttatttgc 12468894  T
Q  156 attttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgt 220  Q
    |||||||| ||| ||||  || || || | ||||||||||||| ||||||||||| || |||||||    
T  12468893 attttctttactgatctctgttgataggcagttatcttcatacaaaaacagttttcttcatcttgt 12468828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 28037250 - 28037124
Alignment:
Q  40 tagaaaagagtcacataa--tgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgt--taaa 135  Q
    ||||||||||||| ||||  ||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||| ||||||  ||||  ||||    
T  28037250 tagaaaagagtcatataagatgtatgtaatctgatttgtgaaactacatttacattaatgcaatgcaatttaccttttcttcaagtttacgcgttctaaa 28037151  T
Q  136 ctttgaagtcttttacttgcattttct 162  Q
    |||| ||||||||| ||||||||||||    
T  28037150 cttttaagtcttttgcttgcattttct 28037124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 25621124 - 25621245
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaactt 138  Q
    |||||||||||| | |||||||||||||| ||||||  |||||| ||||| |||||||||| |||||||| |||||||||||||||||||  ||||||||    
T  25621124 agaaaagagtcatagaatgtatgtaatctaatttgtcgaaccacctttacattaatgcaatacaatttaccttttctttaagtttctgcgttttaaactt 25621223  T
Q  139 tgaagtc-ttttacttgcattt 159  Q
    | ||||| ||||||||||||||    
T  25621224 ttaagtctttttacttgcattt 25621245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 15682927 - 15682734
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttaca-ttttctttaagtttctgc-gttaaactt 138  Q
    |||||| ||||| ||||| |||| ||||||||||||  |||||| ||||| |||||||||||||||||||| |||| || |||||  |||  ||||||||    
T  15682927 agaaaatagtcatataatatatgcaatctgatttgtctaaccacttttacattaatgcaatgcaatttacacttttattaaagttgatgcatttaaactt 15682828  T
Q  139 tgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcata-caaaacagttttattgatcttgttcataaaacaa 231  Q
    | |||| ||||| |||||||| ||||||| || || ||||||||   ||| | ||||||  |||||  |||| || ||||||||||||||||||    
T  15682827 ttaagtgttttagttgcatttacttcactaatttatgtcgaaaggaagttcttttcatataaaaacgattttcttcatcttgttcataaaacaa 15682734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 18046458 - 18046378
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||| |||||| ||||||||  |||||| |||| |||||||||||||||||||| |||||||||||||| ||||||    
T  18046458 acataatgtgtgtaatatgatttgtcgaaccacctttattttaatgcaatgcaatttaccttttctttaagtttttgcgtt 18046378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 7524762 - 7524851
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc 129  Q
    ||||||||||||  |||||| |||||||||||||||||  |||||| ||||| ||||||||||| |||||||||||| |||||||||||||    
T  7524762 agaaaagagtcatacataatttatgtaatctgatttgtcgaaccacctttacattaatgcaatgtaatttacatttt-tttaagtttctgc 7524851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 18084367 - 18084292
Alignment:
Q  57 atgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||  |||||||| ||||||| |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  18084367 atgtatgtaaaatgatttgtgaaaccacctttattttaatgtaatgcaatttatcttttctttaagtttctgcgtt 18084292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 41132012 - 41131918
Alignment:
Q  40 tagaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||||||||||  || |||||||||||||||||||||  |||||| || | |||||||| | ||||||| | |||||||||||||||||||||    
T  41132012 tagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttcattttaatgccaggcaatttgctttttctttaagtttctgcgtt 41131918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 4978862 - 4978963
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaactttgaagtctttt 149  Q
    |||||||| ||||||||||||||||  |||||  | ||  ||||||||||||||||||| ||||||| |||||| ||||  ||||||||| |||||||||    
T  4978862 acataatgcatgtaatctgatttgtcgaaccatctatatattaatgcaatgcaatttaccttttcttcaagtttatgcgttttaaacttttaagtctttt 4978961  T
Q  150 ac 151  Q
    ||    
T  4978962 ac 4978963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 11993933 - 11994067
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttaca----------ttttctttaagtttctg 128  Q
    ||||||||||||||||||||||||||  |||||||| ||||||   |||| ||  ||||||||||||||||||          |||||||||||||||||    
T  11993933 agaaaagagtcacataatgtatgtaacttgatttgtcaaaccatcattacattcaaatgcaatgcaatttacatttctttcagttttctttaagtttctg 11994032  T
Q  129 cg-ttaaactttgaagtcttt-tacttgcattttc 161  Q
    || ||||||||| |||||||| |||||||||||||    
T  11994033 cgtttaaacttttaagtctttatacttgcattttc 11994067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 9022577 - 9022642
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaa 121  Q
    ||||||||||||||||||| |  |||||| |||| |||||||||||  ||||||| ||||||||||    
T  9022577 aatgtatgtaatctgatttctcgaaccacctttattttaatgcaataaaatttaccttttctttaa 9022642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 23090 - 22902
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgttaaactttg 140  Q
    |||||||||||||| ||||||| ||||||||||||||  ||||||||||  ||||| ||||||||||||| |||||||||||||| ||  |||||||||     
T  23090 agaaaagagtcacaaaatgtatataatctgatttgttgtaccacatttaaattaattcaatgcaatttacgttttctttaagtttgtg-tttaaactttt 22992  T
Q  141 aagtc--ttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcat-acaaaacagttttattgatcttgttcataaa 227  Q
    |||||  |||||||||||| ||||| |||||| |  |||||||| |  |||||||||| ||||| |||||||||| ||||||||||||||    
T  22991 aagtcttttttacttgcatgttctttacttatttctgtcgaaaggcaattatcttcataacaaagcagttttatttatcttgttcataaa 22902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 24924956 - 24924764
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  ||||||||||||||||||||||||  |||||| ||||| ||||||||||||||| ||| |||||||||||||||| ||  |||||     
T  24924956 agaaaagagtcatacataatgtatgtaatctgatttgtcgaaccacctttacattaatgcaatgcaatataccttttctttaagtttctacgttttaaaa 24924857  T
Q  137 tttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcat--acaaaacagttttattgatcttgttcataaa 227  Q
    ||| ||||||||||||||||||| ||| | ||||||  |||||||||| |   | |||||  |||||||| |||| || ||||||||||||||    
T  24924856 ttttaagtcttttacttgcatttcctttatttatctctgtcgaaagacagaccttttcatacacaaaacaattttcttcatcttgttcataaa 24924764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 12568217 - 12568101
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc--gttaaac 136  Q
    ||||||||||||  ||||||||||||||||||||| |  |||| || ||||| ||||||||||||||||||| |||||||||||||| |||   ||||||    
T  12568217 agaaaagagtcatacataatgtatgtaatctgattagccaaactacctttacattaatgcaatgcaatttaccttttctttaagtttttgcattttaaac 12568118  T
Q  137 tttgaagtcttttactt 153  Q
     ||||||||||||||||    
T  12568117 gttgaagtcttttactt 12568101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 4697538 - 4697462
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||||||||||||||| ||  |||||| |||||||||||||||| |||||||| |||||||||||||| ||||||    
T  4697538 aatgtatgtaatctgattcgtcgaaccacctttactttaatgcaatacaatttaccttttctttaagtttatgcgtt 4697462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 24476389 - 24476195
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcg-ttaaac-t 137  Q
    |||||| ||||| | ||||| ||||||  |||||| ||||||||||||  ||| |||||||||||||||||| |||||||||||| ||||| |||||| |    
T  24476389 agaaaatagtcatagaatgtttgtaat--gatttgctaaaccacattttatttcaatgcaatgcaatttaca-tttctttaagttactgcgtttaaactt 24476293  T
Q  138 ttgaagt--cttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaaacaaac 233  Q
    || ||||   |||||||||||||||||||||| || |  ||||||||||  | ||||| |||| |||||||||||| | |||||||||||||| |||||    
T  24476292 tttaagttctttttacttgcattttcttcactgatttctgtcgaaagacattcatctt-atacaaaaacagttttagtcatcttgttcataaagcaaac 24476195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 18553270 - 18553189
Alignment:
Q  146 ttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatacaaaa-cagttttattgatcttgttcataaa 227  Q
    |||||||||||||| ||||||| || |  ||||||||||  |||||||||||||||| |||||||||| ||||||||||||||    
T  18553270 ttttacttgcattt-cttcactgatttttgtcgaaagacaattatcttcatacaaaaacagttttattcatcttgttcataaa 18553189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 21823724 - 21823660
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagt 123  Q
    ||||||||||||  |||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||    
T  21823724 aatgtatgtaat--gatttgttgaaccacctttactttagtgcaatgcaatttac-ttttctttaagt 21823660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 26654146 - 26654215
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaattt 108  Q
    ||||||||||||  ||||||||||||||| ||||||||  |||||| ||| | |||||||||||||||||    
T  26654146 agaaaagagtcatacataatgtatgtaatatgatttgtcgaaccacctttgcattaatgcaatgcaattt 26654215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 55760244 - 55760203
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatccctag 42  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  55760244 attatagtaccctgtccattgggggcccattgccatccctag 55760203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 14632787 - 14632864
Alignment:
Q  54 ataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||| ||||||||| | ||||| ||   |||||||||||||| |||| |||| |||||||||| ||||||    
T  14632787 ataatgtatgtaaactgatttgt-agaccactttagttttaatgcaatgcattttaaatttcctttaagtttatgcgtt 14632864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 16675171 - 16675097
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||||||||  ||||||||  |||||| |||| ||| |||||||| |||||||| ||||||||| ||||||||    
T  16675171 aatgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgc 16675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 12810056 - 12810097
Alignment:
Q  91 tttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||||||||||| ||||||||| |||||||||| ||||||    
T  12810056 tttaatgcaatgcattttacatttcctttaagtttatgcgtt 12810097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 16288812 - 16288771
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatg 97  Q
    |||||||||||||||||||||| |||||| ||||| ||||||    
T  16288812 aatgtatgtaatctgatttgttgaaccacctttacattaatg 16288771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34459799 - 34459839
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    ||||||||||||| |||||||||  ||||||||||||||||    
T  34459799 attatagtaccctacctattgggtacccattgccatcccta 34459839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 5892680 - 5892546
Alignment:
Q  41 agaaaagagtcac-ataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt--aaact 137  Q
    ||||||||||||| | |||||||||||| |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| ||||||  ||| |    
T  5892680 agaaaagagtcaccaaaatgtatgtaatttgatttgttgtaccacatttacattaatgcaatgcaatttacattttctttaagtttatgcgtttaaaatt 5892581  T
Q  138 ttgaagtc--ttttacttgcattttcttcacttat 170  Q
    || |||||  |||||||||||||||||| ||||||    
T  5892580 ttaaagtcttttttacttgcattttctttacttat 5892546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 22450043 - 22450165
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaact 137  Q
    ||||||||||||  || |||||||||||||||||||||  ||||||||| || |||||||||||||||||||  ||||||||||||| |||| |||||||    
T  22450043 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacattaacattaatgcaatgcaatttaccatttctttaagtttatgcgtttaaact 22450142  T
Q  138 ttgaagtcttttacttgcatttt 160  Q
    || || |||||||||||||||||    
T  22450143 ttaaaatcttttacttgcatttt 22450165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 32352267 - 32352077
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt-aaact 137  Q
    ||||||||||||  || |||||||||||| ||||||||  |||||| ||||| |||||| ||| ||||| |  ||||||| |||||| |||||| |||||    
T  32352267 agaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacattaatgtaatacaattgaacttttcttcaagtttttgcgtttaaact 32352168  T
Q  138 ttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaa 227  Q
    || ||| ||||||||||||||||||| |||| |||   || ||||||  |||||||||||| ||||||||||  || ||||||||||||||    
T  32352167 tttaagccttttacttgcattttctttacttttctttttcaaaagacaattatcttcatacaaaaacagtttccttcatcttgttcataaa 32352077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 32368928 - 32368738
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt-aaact 137  Q
    ||||||||||||  || |||||||||||| ||||||||  |||||| ||||| |||||| ||| ||||| |  ||||||| |||||| |||||| |||||    
T  32368928 agaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacattaatgtaatacaattgaacttttcttcaagtttttgcgtttaaact 32368829  T
Q  138 ttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcatac-aaaacagttttattgatcttgttcataaa 227  Q
    || ||| ||||||||||||||||||| |||| |||   || ||||||  |||||||||||| ||||||||||  || ||||||||||||||    
T  32368828 tttaagccttttacttgcattttctttacttttctttttcaaaagacaattatcttcatacaaaaacagtttccttcatcttgttcataaa 32368738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 41652023 - 41652185
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc--gttaaac 136  Q
    ||||||||||||  || |||||||||||| ||||||||  |||||| ||||| |||||| |||| ||| ||| |||||||||||||||| |   ||||||    
T  41652023 agaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccacctttacattaatgtaatgtaatctaccttttctttaagtttctcccttttaaac 41652122  T
Q  137 tttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcataca 199  Q
    ||| ||||||||||||||||||| ||| |||| |||  ||||||||||  |||| ||||||||    
T  41652123 ttttaagtcttttacttgcatttcctttacttttctctgtcgaaagacatttattttcataca 41652185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 28291582 - 28291703
Alignment:
Q  41 agaaaagagtcacata--atgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaact 137  Q
    |||||||||||| |||  |||| |||||||||||||||  ||| || ||||| ||||||||||||||||||  |||||||||| ||| |||| |||||||    
T  28291582 agaaaagagtcatatagaatgtgtgtaatctgatttgtcgaacaacctttacattaatgcaatgcaatttagcttttctttaaatttttgcgtttaaact 28291681  T
Q  138 ttgaagtcttttacttgcattt 159  Q
    || |||||||||||||||||||    
T  28291682 tttaagtcttttacttgcattt 28291703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 23355537 - 23355444
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||  || |||||||||||||||||||||  |||||| ||||| ||||||||||||||||||| | |||||||||||| ||||||    
T  23355537 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaatgcaatttacgtattctttaagtttatgcgtt 23355444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 19709527 - 19709594
Alignment:
Q  54 ataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaa 121  Q
    |||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||| ||||||||||    
T  19709527 ataatgtatgtaatttgatttgtcgaaccacatttacattaatgcaatgcaatttaccttttctttaa 19709594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 22455158 - 22455211
Alignment:
Q  79 aaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  22455158 aaccacctttacattaatgcaatgcaatttaccttttctttaagtttctgcgtt 22455211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 27123664 - 27123744
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||||||||||||| |  |||||| |||| |||||||||||||||||||   || |||||||||| ||||||    
T  27123664 acataatgtatgtaatctgatttatcgaaccacctttattttaatgcaatgcaatttatcattcctttaagtttatgcgtt 27123744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 10600223 - 10600290
Alignment:
Q  58 tgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    |||||||||||||||||||  | | || ||||||||||||||||||||||||| ||| ||||||||||    
T  10600223 tgtatgtaatctgatttgtcgatctacctttactttaatgcaatgcaatttacctttactttaagttt 10600290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 15340933 - 15341023
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattttctttaagtttctg 128  Q
    ||||||||||||  || ||||||||||| ||||||||| ||||||| ||||| ||  |||||||||||||||||| ||||| ||||||||||    
T  15340933 agaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgcaatttaca-tttctataagtttctg 15341023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 15429998 - 15430088
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattttctttaagtttctg 128  Q
    ||||||||||||  || ||||||||||| ||||||||| ||||||| ||||| ||  |||||||||||||||||| ||||| ||||||||||    
T  15429998 agaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgcaatttaca-tttctataagtttctg 15430088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 15521302 - 15521392
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattttctttaagtttctg 128  Q
    ||||||||||||  || ||||||||||| ||||||||| ||||||| ||||| ||  |||||||||||||||||| ||||| ||||||||||    
T  15521302 agaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgcaatttaca-tttctataagtttctg 15521392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 23818231 - 23818159
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||||||| ||||||||| | ||||| |||| |||||||||||||| ||||| ||| ||||||||||    
T  23818231 acataatgtatgtaaactgatttgt-agaccacctttattttaatgcaatgcattttacttttcctttaagttt 23818159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 28862486 - 28862674
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacattt-actttaatgcaatgcaatttacattttctttaagtttctgcgt-taaactt 138  Q
    |||||||||||||| ||||| || ||  | |||||| ||||||| ||| | || |||||||||||||||||| ||||||||||||||||  | |||| ||    
T  28862486 agaaaagagtcacagaatgtgtgcaacttaatttgtcaaaccacctttgaattcaatgcaatgcaatttaca-tttctttaagtttctgaatataaagtt 28862584  T
Q  139 tgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttcat-acaaaacagttttattgatcttgttcataaa 227  Q
    | |||  ||||||||  ||| |||||| | ||    ||||||| |  ||||||||||| |||||||||||||||| ||||||||| ||||    
T  28862585 ttaagcgttttacttatattgtcttcattgattcttgtcgaaaaatagttatcttcatcacaaaacagttttattcatcttgttcttaaa 28862674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 13110265 - 13110201
Alignment:
Q  69 tgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||| |||||| |||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  13110265 tgatttgttgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcgtt 13110201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 6017615 - 6017534
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttac--tttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||||| |||||||||  ||| ||||||||  || |||||||||||||||||| ||||||||| ||| ||||||    
T  6017615 acataatgtatgtaaactgatttgtcgaactacatttacatttaaatgcaatgcaatttaca-tttctttaaatttttgcgtt 6017534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 24680834 - 24680889
Alignment:
Q  69 tgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtt 124  Q
    ||||||||  ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  24680834 tgatttgtcgaaccacatttattttaatgcaatgtaatttaccttttctttaagtt 24680889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 11030742 - 11030674
Alignment:
Q  41 agaaaagagtcacata--atgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatt 107  Q
    |||||||||||| |||  |||||||||||||||||| |  |||||| || |||||||||||||||||||    
T  11030742 agaaaagagtcatatagaatgtatgtaatctgatttatcgaaccaccttaactttaatgcaatgcaatt 11030674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 17983433 - 17983354
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttacttt-aatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||||| ||||||||| | |||| ||||||||| ||||||||||| ||||||||| ||| |||||| ||||||    
T  17983433 acataatgtatgtaaactgatttgt-agacca-atttacttttaatgcaatgcattttacatttccttaaagtttatgcgtt 17983354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 22450173 - 22450271
Alignment:
Q  135 actttgaagtcttttacttgcattttcttcacttatctacgtcgaaagacggttatcttc--atacaaaacagttttattgatcttgttcataaaacaa 231  Q
    ||||| ||||||||||||||  ||| ||| ||| ||||  |||||||||| ||||| |||  ||| |||| |||||| || ||||||||||||||||||    
T  22450173 actttcaagtcttttacttgtgtttcctttactgatctctgtcgaaagacagttattttcatataaaaaatagttttcttcatcttgttcataaaacaa 22450271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 24093299 - 24093340
Alignment:
Q  91 tttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||||||||||| ||||||||| |||||||||| ||||||    
T  24093299 tttaatgcaatgcattttacatttcctttaagtttatgcgtt 24093340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34776905 - 34776942
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcc 38  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  34776905 attatagtaccctgcccattgggagcccattgccatcc 34776942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 28712444 - 28712337
Alignment:
Q  54 ataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaactttgaagtcttttac 151  Q
    |||||||||||||||||||||||  |||||| ||||| ||||||||||| ||||||| |||||||||||||||||||  |||||| || |||||||||||    
T  28712444 ataatgtatgtaatctgatttgtcgaaccacctttacattaatgcaatgtaatttaccttttctttaagtttctgcgttttaaacatttaagtcttttac 28712345  T
Q  152 ttgcattt 159  Q
    ||||||||    
T  28712344 ttgcattt 28712337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 17352786 - 17352660
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg-ttaaact 137  Q
    ||||||||||||  |||||||  |||||||||||||||  |||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||    
T  17352786 agaaaagagtcatacataatgcttgtaatctgatttgtcgaaccacatttacattaatgcaatgcaatttaccttttctttaaatttctgcgtttaaact 17352687  T
Q  138 ttgaagtc-ttttacttgcattttctt 163  Q
    |  ||||| |||||||| |||||||||    
T  17352686 tctaagtctttttactttcattttctt 17352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 19723894 - 19724006
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcg--ttaaac 136  Q
    ||||||||||||  ||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||| |||||||||| ||| ||||  ||||||    
T  19723894 agaaaagagtcatacataatgtatgtaatctgatttgatgaactacctttacattaatgcaatgcaatttactttttctttaaatttatgcgttttaaac 19723993  T
Q  137 tttgaagtctttt 149  Q
    ||| |||||||||    
T  19723994 ttttaagtctttt 19724006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 16793348 - 16793276
Alignment:
Q  57 atgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgc 129  Q
    ||||||||||||||||||||  |||||  |||| |||||||||||||||||||| ||||| ||||||||||||    
T  16793348 atgtatgtaatctgatttgtcgaaccatttttattttaatgcaatgcaatttaccttttccttaagtttctgc 16793276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 4031071 - 4031140
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    |||||| |||||| | |||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  4031071 aatgtaagtaatcaggtttgttgaaccacctttacattaatgcaatgcaatttaccttttctttaagttt 4031140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 6039028 - 6038946
Alignment:
Q  41 agaaaagagtcacataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttct 127  Q
    ||||||||||||||||||||||||||   |||||||| |||||  ||||  ||||||||||| ||||||| ||||||||||||||||    
T  6039028 agaaaagagtcacataatgtatgtaa--agatttgttgaaccatctttaaattaatgcaatg-aatttac-ttttctttaagtttct 6038946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 10163274 - 10163441
Alignment:
Q  41 agaaaagagtcacata--atgtatgtaatctgatttgttaaaccacatttacttt--aatgcaatgcaatttacattttctttaagtttctgcgtt--aa 134  Q
    |||||||||||| |||  |||||||||| |||||||||  |||| | ||||| ||  |||||||||||||||||| ||||||||||||| ||||||  ||    
T  10163274 agaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccgcgtttacatttaaatgcaatgcaatttaca-tttctttaagtttttgcgtttgaa 10163372  T
Q  135 actttgaagtcttttacttgca-ttttcttcacttatctacgtcgaaagacggttatcttcatacaaaa 202  Q
      |||||  | ||||||||||| ||||||| |||| | | || ||||||||| |||  |||||||||||    
T  10163373 cttttgagcttttttacttgcatttttctttacttctttccgccgaaagacgtttactttcatacaaaa 10163441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 11744568 - 11744458
Alignment:
Q  94 aatgcaatgcaatttacattttctttaagtttctgcg-ttaaactttgaagtc-ttttacttgca-ttttcttcacttatctacgtcgaaagacggttat 190  Q
    |||||||||||||||||||| | ||||||||||| || ||||||||| ||| | ||||||||||| ||||||| |||| | | |||||||||||  |||     
T  11744568 aatgcaatgcaatttacattgt-tttaagtttctacgtttaaacttttaagcctttttacttgcatttttctttacttctttccgtcgaaagacttttac 11744470  T
Q  191 cttcatacaaaa 202  Q
     |||||||||||    
T  11744469 tttcatacaaaa 11744458  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 9404772 - 9404738
Alignment:
Q  98 caatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  9404772 caatgcaatttacattttctttaagtttatgcgtt 9404738  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 14763041 - 14763079
Alignment:
Q  91 tttaatgcaatgcaatttacattttctttaagtttctgc 129  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  14763041 tttaatgcaatgcaatttatcttttctttaagtttctgc 14763079  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 24154179 - 24154270
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttac--tttaatgcaatgcaatttacattttctttaagtttctgc 129  Q
    ||||||||||||  || ||||||||||| |||||||||  |||||| |||||  || |||||||||| ||||||  |||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccacctttacatttaaatgcaatgctatttac-gtttctttaagtttctgc 24154270  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 13002856 - 13002950
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttac--tttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||  || ||||||||||| |||||||||  |||||| |||||  || ||| |||||||||| ||| ||||||||||||| ||||||    
T  13002856 agaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccacctttacgtttaaatacaatgcaattaaca-tttctttaagtttatgcgtt 13002950  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3516343 - 3516383
Alignment:
Q  1 attatagtaccctgcctattgggggcccattgccatcccta 41  Q
    |||| ||||||||||| |||| |||||||||||||||||||    
T  3516343 attacagtaccctgcccattgagggcccattgccatcccta 3516383  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 6038918 - 6038859
Alignment:
Q  176 tcgaaagacggttatcttcatacaaaa--cagttttattgatcttgttcataaaacaaac 233  Q
    |||||||||| ||||||| || |||||  |||||||||| |||||||||||||| |||||    
T  6038918 tcgaaagacgattatctttattcaaaaaacagttttattcatcttgttcataaagcaaac 6038859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 16434302 - 16434250
Alignment:
Q  176 tcgaaagacggttatcttcat-acaaaacagttttattgatcttgttcataaa 227  Q
    ||||||||| ||||||||||| |||||| ||||||||| ||||| ||||||||    
T  16434302 tcgaaagacagttatcttcatcacaaaaaagttttattcatctttttcataaa 16434250  T

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Target: scaffold0167 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 10306 - 10392
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||| ||||||||||||||    
T  10306 agaaaagagtcatacataatgtatgtaatctgatttgtcaaaccacctttacattaatgtaatgcaatttaccttttctttaagttt 10392  T

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Target: scaffold0320 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 6465 - 6392
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    |||||||||||||||||||||||||  |||| | ||||| |||||| |||||||||||| ||||||||||||||    
T  6465 acataatgtatgtaatctgatttgtcgaaccgcctttacattaatgtaatgcaatttaccttttctttaagttt 6392  T

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Target: scaffold0040 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 26932 - 27023
Alignment:
Q  41 agaaaagagtca--cataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||  ||||||||||||||||| ||||||  |||||| |||| |||||||||||||||||||  |||||||| ||||||||||||    
T  26932 agaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta-tttaatgcaatgcaatttatcttttcttt-agtttctgcgtt 27023  T

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Target: scaffold0142 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 20629 - 20553
Alignment:
Q  52 acataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctg 128  Q
    ||||||||||||| |  | |||||| ||||||| |||| |||||||||||| ||||||  |||||||||| ||||||    
T  20629 acataatgtatgtgaaataatttgtcaaaccacctttattttaatgcaatgtaatttatgttttctttaactttctg 20553  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 48312 - 48241
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    |||||||||||||||||||||  |||||| ||||| ||     | ||||||||||||||||||||||||| ||||||    
T  48312 aatgtatgtaatctgatttgtcgaaccacttttacatt-----attgcaatttacattttctttaagtttatgcgtt 48241  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 38917 - 38979
Alignment:
Q  41 agaaaagagtcacataa--tgtatgtaatctgatttgttaaaccacatttactttaatgcaat 101  Q
    |||||||||||| ||||  |||||||||||||||||||  |||||| ||||| ||||||||||    
T  38917 agaaaagagtcatataaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 38979  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 184505 - 184428
Alignment:
Q  54 ataatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagtttctgcgtt 132  Q
    ||||||||||||| ||||||||| | ||||| ||   |||||||||||||| |||| |||| |||||||||| ||||||    
T  184505 ataatgtatgtaaactgatttgt-agaccactttagttttaatgcaatgcattttaaatttcctttaagtttatgcgtt 184428  T

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Target: scaffold0170 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 1349 - 1281
Alignment:
Q  56 aatgtatgtaatctgatttgttaaaccacatttactttaatgcaatgcaatttacattttctttaagttt 125  Q
    ||||||||||| || |||||| | ||||| |||| |||||||||||||| ||||| ||| ||||||||||    
T  1349 aatgtatgtaagcttatttgt-agaccacctttattttaatgcaatgcattttacctttcctttaagttt 1281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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