View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_4 (Length: 546)

Name: NF18600_low_4
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_4
NF18600_low_4
[»] chr7 (9 HSPs)
chr7 (10-371)||(9124480-9124849)
chr7 (477-528)||(9125353-9125404)
chr7 (342-396)||(22760862-22760916)
chr7 (343-413)||(22932717-22932787)
chr7 (343-445)||(30579335-30579437)
chr7 (354-396)||(33460446-33460488)
chr7 (342-396)||(48771937-48771991)
chr7 (343-396)||(43215184-43215237)
chr7 (343-396)||(48125197-48125250)
[»] chr8 (7 HSPs)
chr8 (343-396)||(28783060-28783113)
chr8 (343-414)||(968362-968433)
chr8 (363-427)||(6536540-6536604)
chr8 (363-419)||(25389476-25389532)
chr8 (342-396)||(6530806-6530860)
chr8 (354-396)||(33692326-33692367)
chr8 (346-403)||(34966866-34966923)
[»] chr6 (7 HSPs)
chr6 (337-414)||(33549098-33549175)
chr6 (342-414)||(30127399-30127471)
chr6 (361-396)||(10338197-10338232)
chr6 (343-414)||(12234512-12234583)
chr6 (363-425)||(3779359-3779421)
chr6 (343-413)||(31622997-31623067)
chr6 (367-427)||(4105075-4105135)
[»] scaffold0258 (1 HSPs)
scaffold0258 (343-414)||(15328-15399)
[»] chr5 (8 HSPs)
chr5 (343-414)||(16773807-16773878)
chr5 (343-396)||(16457810-16457863)
chr5 (374-439)||(29210389-29210454)
chr5 (343-396)||(30109331-30109384)
chr5 (343-393)||(19373239-19373289)
chr5 (363-445)||(35796593-35796675)
chr5 (343-396)||(30883221-30883274)
chr5 (343-447)||(21589288-21589392)
[»] chr1 (6 HSPs)
chr1 (343-418)||(40257399-40257474)
chr1 (362-414)||(52029942-52029994)
chr1 (343-394)||(952511-952562)
chr1 (337-396)||(37046979-37047038)
chr1 (340-396)||(9165218-9165274)
chr1 (342-414)||(18037618-18037690)
[»] chr4 (7 HSPs)
chr4 (364-414)||(19112929-19112979)
chr4 (354-403)||(30557286-30557335)
chr4 (360-396)||(17618298-17618334)
chr4 (341-396)||(8306483-8306538)
chr4 (365-445)||(7949428-7949508)
chr4 (350-394)||(22429613-22429657)
chr4 (341-425)||(46545709-46545793)
[»] chr3 (5 HSPs)
chr3 (343-444)||(36720381-36720482)
chr3 (354-394)||(17554782-17554822)
chr3 (363-445)||(8170692-8170774)
chr3 (343-396)||(18319191-18319244)
chr3 (361-414)||(30510204-30510257)
[»] chr2 (9 HSPs)
chr2 (345-396)||(12086152-12086203)
chr2 (343-396)||(2295909-2295962)
chr2 (343-396)||(19016031-19016084)
chr2 (343-396)||(26482093-26482146)
chr2 (363-396)||(30410572-30410605)
chr2 (363-427)||(3001399-3001463)
chr2 (354-414)||(7599986-7600046)
chr2 (343-403)||(26545840-26545900)
chr2 (344-396)||(37755994-37756046)
[»] scaffold0194 (1 HSPs)
scaffold0194 (354-396)||(13069-13111)
[»] scaffold0126 (1 HSPs)
scaffold0126 (363-427)||(25339-25403)
[»] scaffold0070 (1 HSPs)
scaffold0070 (354-394)||(38927-38967)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 9124480 - 9124849
Alignment:
Q  10 attattctagcatgtattagtaattttaggatcattcaatcaatcatatagtatcgttggataacaattttcaagttcattataatacaaatatgataaa 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9124480 attattctagcatgtattcgtaattttaggatcattcaatcaatcatatagtatcgttggataacaattttcaagttcattataatacaaatatgataaa 9124579  T
Q  110 ttttgaaataaatgtacttttttggatggttttcctcactttgagattcaatgacgagagtatatttattaatattgaaatctcttctcatgctcat--- 206  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9124580 ttttgaaataaatatacttttttggatgcttttcctcactttgagattcaatgacgagagtatatttattaatattgaaatctcttctcatgctcattct 9124679  T
Q  207 ------tctttagtatctttgataacttaaagccagcttgagaattatggagtttctttgtcagatgtcattaaggaagatgtcaaggctaannnnnnnn 300  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  9124680 ttagtatctttagtatctttgataacttaaagccagcttgagaattatggagtttctttgtcagatgtcattaaggaagatgtcaaggctaa-ttttttt 9124778  T
Q  301 atggtttagatgaaagatgtggcttaatactactaagaacataacccacttaagttggtttggtggtattg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||    
T  9124779 atggtttagatgaaagatgtggcttaatactactaagaacataacctacttgagttggtcttgtggtattg 9124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 9125353 - 9125404
Alignment:
Q  477 catgtatttttgaagtataatggtgattgagatttgtataaagagtttttag 528  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9125353 catgtacttttgaagtataatggtgattgagatttgtataaagagtttttag 9125404  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 22760862 - 22760916
Alignment:
Q  342 taacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||  |||||| ||||||||||| |||| ||||| |||||||||||||    
T  22760862 taacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcct 22760916  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 22932787 - 22932717
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggtt 413  Q
    |||||||||  |||||| |||||||||||||||| ||||| |||||| |||| | ||| |||| |||||||    
T  22932787 aacccacttgggttggtatggtggtattggcttgggacctgggagtgcgctcttattcaagatctcaggtt 22932717  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 30579335 - 30579437
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggtagg 442  Q
    |||||||||  |||||  |||||||||||||||||||||| ||||||| | |||  || || | |||||||| |||| |||||||  || ||||||| ||    
T  30579335 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgattttctctggtgccaatttaggtggg 30579434  T
Q  443 cta 445  Q
    |||    
T  30579435 cta 30579437  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 33460488 - 33460446
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||    
T  33460488 gttggtttggtggtattggtttgggacctaggagtgtggtcct 33460446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 48771937 - 48771991
Alignment:
Q  342 taacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||  ||||| ||||||||||||||||| || || |||||||||||||    
T  48771937 taacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcct 48771991  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 43215184 - 43215237
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||  |||||| | |||||||||||||| ||||| |||||||||||||    
T  43215184 aacccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcct 43215237  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 48125250 - 48125197
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||  |||||| ||||||| |||||||| ||||| |||||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcct 48125197  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 28783060 - 28783113
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||  ||||| ||||||||||||||||||||||| |||||||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcct 28783113  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 968362 - 968433
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    ||||||||| ||||||  |||||||||||||||| ||||| |||||||||||||  ||||| | ||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 968433  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 6536540 - 6536604
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggt 427  Q
    |||||||||||||| |||||||||||||||||||  || || | ||||||||||||  |||||||    
T  6536540 gtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcaattctctctggt 6536604  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 25389476 - 25389532
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaattt 419  Q
    |||||||||||||| ||||||||||| ||||||| ||| |||| | |||||||||||    
T  25389476 gtggtattggcttgggacctaggagtatgctcctcttcaagatcttaggttcaattt 25389532  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 6530806 - 6530860
Alignment:
Q  342 taacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||  |||||  ||||||| |||||||| |||||||||||||||||||    
T  6530806 taacccacttgggttggcctggtggtgttggcttgggacctaggagtgtgctcct 6530860  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 33692367 - 33692326
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  33692367 gttggtttggtggtattggcttgagacataggag-gtgctcct 33692326  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 34966923 - 34966866
Alignment:
Q  346 ccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgag 403  Q
    |||||| ||||||| || ||||||||||||||||| | |||||||||| || ||||||    
T  34966923 ccacttgagttggtctgatggtattggcttgagacttgggagtgtgctactcttcgag 34966866  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 414
Target Start/End: Original strand, 33549098 - 33549175
Alignment:
Q  337 gaacataacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    ||||| |||||||||  |||||| |||||||||||||||| ||||| |||||||||||||  ||||| | ||||||||    
T  33549098 gaacaaaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 33549175  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 30127399 - 30127471
Alignment:
Q  342 taacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    ||||||||||  |||||| |||||||||||||||| |  || ||||||||||||| |||||| | ||||||||    
T  30127399 taacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctcaggttc 30127471  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 10338232 - 10338197
Alignment:
Q  361 tggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||||||||| |||||||||||||||||||    
T  10338232 tggtggtattggcttgggacctaggagtgtgctcct 10338197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 12234583 - 12234512
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    |||||||||| |||||  ||||||||||| |||| ||||| |||||||||||| | ||||| | ||||||||    
T  12234583 aacccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttc 12234512  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 3779359 - 3779421
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctg 425  Q
    |||||||||||||||||| | |||||||||||||| || || | |||| ||||||| ||||||    
T  3779359 gtggtattggcttgagacttgggagtgtgctccttctcaaggtctcagattcaattccctctg 3779421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 31623067 - 31622997
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggtt 413  Q
    |||||||||  ||||||  ||||||||||||||| ||||| |||||||||||||  ||||| | |||||||    
T  31623067 aacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt 31622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 4105075 - 4105135
Alignment:
Q  367 tattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggt 427  Q
    ||||||||||| ||||||||||||||||||  |  |||| |||||||| |||| |||||||    
T  4105075 tattggcttgaaacctaggagtgtgctcctccttaagatctcaggttcgattttctctggt 4105135  T

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Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 15399 - 15328
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    |||||||||  |||||| |||||||||||||||| ||||| |||||||||||||  ||||| | ||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 15328  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 16773807 - 16773878
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    ||||||||| ||||||| ||||||||||| |||| ||||| |||||||||||||  ||||| | ||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttc 16773878  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 16457810 - 16457863
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||| |||||  |||||||||||||||| ||||| |||||||||||||    
T  16457810 aacccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcct 16457863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 29210389 - 29210454
Alignment:
Q  374 ttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggt 439  Q
    ||||||| |||||||||||||||  ||||| ||||| ||||||||  ||||||||||| |||||||    
T  29210389 ttgagacttaggagtgtgctcctcctcgaggtttcaagttcaattctctctggtatcaatttaggt 29210454  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 30109384 - 30109331
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||  ||||| ||||||||||||||||| ||||| |||||||||||||    
T  30109384 aacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcct 30109331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 19373239 - 19373289
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgct 393  Q
    ||||||||| ||||||  ||||||| |||||||||||||| ||||||||||    
T  19373239 aacccacttgagttggcctggtggtgttggcttgagaccttggagtgtgct 19373289  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 35796675 - 35796593
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggtaggcta 445  Q
    |||||||||| ||  ||| |||||||||||||||  ||  |||||||||||| ||| ||||| || ||| |||||||||||||    
T  35796675 gtggtattggttttggacttaggagtgtgctcctcctcatgatttcaggttcgattccctcttgtgtcaatttaggtaggcta 35796593  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 30883274 - 30883221
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||  |||||| | |||||||||||||| ||||| |||||||||||||    
T  30883274 aacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcct 30883221  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 21589288 - 21589392
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggtagg 442  Q
    |||||||||  |||||  |||||||||||||||| ||||| ||||| |||| ||  ||||  | |||||||| ||| ||||||||  || ||||||| ||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattccctctggtgccaatttaggtggg 21589387  T
Q  443 ctagt 447  Q
    |||||    
T  21589388 ctagt 21589392  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 40257399 - 40257474
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatt 418  Q
    |||||||||  |||||  |||||||||||||||||||||| |||||||||||||  ||||| | ||| ||||||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaatt 40257474  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 52029994 - 52029942
Alignment:
Q  362 ggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    |||||||||| ||||||||||||||||||||||||| || || | ||||||||    
T  52029994 ggtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttc 52029942  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 952511 - 952562
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctc 394  Q
    ||||||||| ||||||| ||||||| |||||||| ||||| |||||||||||    
T  952511 aacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgctc 952562  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 396
Target Start/End: Original strand, 37046979 - 37047038
Alignment:
Q  337 gaacataacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||| |||||||||  |||||| ||||||| |||||||| ||||| |||||||||||||    
T  37046979 gaacaaaacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcct 37047038  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 9165274 - 9165218
Alignment:
Q  340 cataacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||||  |||||  | |||||||||||||| ||||| |||||||||||||    
T  9165274 cataacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcct 9165218  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 18037690 - 18037618
Alignment:
Q  342 taacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    ||||||||||  |||||| || || |||||| ||| ||| | |||||||||||||||||||||| ||| ||||    
T  18037690 taacccacttgggttggtctgatgatattggtttgggacttgggagtgtgctccttttcgagatctcaagttc 18037618  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 19112929 - 19112979
Alignment:
Q  364 tggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    |||||||| |||||||||||||||||||||||| |||||| | ||||||||    
T  19112929 tggtattgacttgagacctaggagtgtgctcctcttcgagttatcaggttc 19112979  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 30557335 - 30557286
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctccttttcgag 403  Q
    |||||| ||||||||||| |||| ||| ||||||||||||||||||||||    
T  30557335 gttggtctggtggtattgacttgggacgtaggagtgtgctccttttcgag 30557286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 17618298 - 17618334
Alignment:
Q  360 ttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17618298 ttggtggtattggcttgagacctgggagtgtgctcct 17618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 8306483 - 8306538
Alignment:
Q  341 ataacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||| ||||||| || ||| || |||||||||||| |||||||||||||    
T  8306483 ataacccacttgagttggtctgttggcatcggcttgagacctgggagtgtgctcct 8306538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 7949508 - 7949428
Alignment:
Q  365 ggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggtaggcta 445  Q
    |||||||||||| ||||| |||||||||||||  || || | |||||||| |||  ||||||| ||| ||||||| |||||    
T  7949508 ggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggcta 7949428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 22429613 - 22429657
Alignment:
Q  350 ttaagttggtttggtggtattggcttgagacctaggagtgtgctc 394  Q
    |||||||| | ||||||||||| ||||||||||| ||||||||||    
T  22429613 ttaagttgatctggtggtattgacttgagacctaagagtgtgctc 22429657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 46545709 - 46545793
Alignment:
Q  341 ataacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctg 425  Q
    |||||||||||  |||||  | ||||||||||||||||||||  ||||||||||||  || |||| |||| ||| |||| |||||    
T  46545709 ataacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctg 46545793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 36720381 - 36720482
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggtagg 442  Q
    |||||||||  |||||| |||||||||||||||| ||  | |||||||||||||  ||||| |||||||||| |||  |||| || ||| ||||||| ||    
T  36720381 aacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtggg 36720480  T
Q  443 ct 444  Q
    ||    
T  36720481 ct 36720482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 17554782 - 17554822
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctc 394  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  17554782 gttggtttggtggtattggcttgggacctgggagtgtgctc 17554822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 8170692 - 8170774
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggtatcactttaggtaggcta 445  Q
    ||||||||||||||| || | |||||||||||||  || || | |||||||| |||||||||||| ||| ||| ||| |||||    
T  8170692 gtggtattggcttgaaacttgggagtgtgctcctactcaaggtctcaggttcgatttcctctggtgtcaatttgggtgggcta 8170774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 18319244 - 18319191
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||| ||||| ||||| ||||||||||||| ||| ||||| |||||||||||||    
T  18319244 aacctacttaggttggcttggtggtattggtttgggacctgggagtgtgctcct 18319191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 30510257 - 30510204
Alignment:
Q  361 tggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||    
T  30510257 tggtggtactggcttgggacctaggagtatgctccttctcgaggtctcaggttc 30510204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 12086203 - 12086152
Alignment:
Q  345 cccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||||||||  |||||||||||||||| ||||| | |||||||||||    
T  12086203 cccacttaagttggcctggtggtattggcttgggacctggaagtgtgctcct 12086152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 2295909 - 2295962
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||| |||| |||| |||||||||||||||| || ||||||| |||||    
T  2295909 aacccacttaggttgatttgttggtattggcttgagatctgggagtgtactcct 2295962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 19016031 - 19016084
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||  |||||| || ||||||||||||||||| | |||||||||||||    
T  19016031 aacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcct 19016084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 26482093 - 26482146
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||| |||||  || |||| |||||||| |||||||||||||||||||    
T  26482093 aacccacttaggttggcctgatggtgttggcttgggacctaggagtgtgctcct 26482146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 30410605 - 30410572
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctcct 396  Q
    |||||||||||||| |||||||||||||||||||    
T  30410605 gtggtattggcttgggacctaggagtgtgctcct 30410572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 3001399 - 3001463
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggt 427  Q
    ||||||||| ||||||| ||||||||||||||||  | ||||| |||||||| |||  |||||||    
T  3001399 gtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctctggt 3001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 7600046 - 7599986
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttc 414  Q
    ||||| ||||||| ||||||||||||| || ||||||||||||  ||||| ||||| ||||    
T  7600046 gttggcttggtggcattggcttgagacttaagagtgtgctcctcctcgaggtttcatgttc 7599986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 26545840 - 26545900
Alignment:
Q  343 aacccacttaagttggtttggtggtattggcttgagacctaggagtgtgctccttttcgag 403  Q
    |||||||||  ||||||||||||||||| ||||| || || | |||||||||||| |||||    
T  26545840 aacccacttgggttggtttggtggtattagcttgggatctggaagtgtgctccttctcgag 26545900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 37756046 - 37755994
Alignment:
Q  344 acccacttaagttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||||||  ||||| ||||||||||||||||| ||||| ||| |||||||||    
T  37756046 acccacttgggttggcttggtggtattggcttgggacctgggaatgtgctcct 37755994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 13111 - 13069
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctcct 396  Q
    ||||| |||||||||||||||||||| || |||||||||||||    
T  13111 gttggcttggtggtattggcttgagatctgggagtgtgctcct 13069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 25403 - 25339
Alignment:
Q  363 gtggtattggcttgagacctaggagtgtgctccttttcgagatttcaggttcaatttcctctggt 427  Q
    |||||||||||||||||| | |||||||||||||| || || | |||||||| |||  |||||||    
T  25403 gtggtattggcttgagacttgggagtgtgctccttctcaaggtctcaggttcgattatctctggt 25339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 38967 - 38927
Alignment:
Q  354 gttggtttggtggtattggcttgagacctaggagtgtgctc 394  Q
    |||||| |||||||||||||||| ||||||||||| |||||    
T  38967 gttggtctggtggtattggcttgggacctaggagtatgctc 38927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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