View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_40 (Length: 232)
Name: NF18600_low_40
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 14791460 - 14791252
Alignment:
| Q |
12 |
agcaaaggtcaagtaaaaggagaataattccaccac-------agtgagaatatgatttgtgatcaaagcgtgggttctgtttcatccagcgatgccaat |
104 |
Q |
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| T |
14791460 |
agcaaaggtcaagtaaaaggagaataattccaccacgtccagtagtgagaatatgatttgtgatcaaagcgtgggttctgtttcatccagcgatgccaat |
14791361 |
T |
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| Q |
105 |
ggctggcataatgtgatcgttctttcaaaagtatactagttattttagtagagttttcttaaactttcattgcaattatcccttttattttactattgga |
204 |
Q |
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| T |
14791360 |
ggctggcataatgtgatcgttctttcaaaagtatactagttattttagtagagttttcttaaactttcattgcaattatcccttttattttactattgga |
14791261 |
T |
|
| Q |
205 |
tgtaagtat |
213 |
Q |
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| T |
14791260 |
tgtaagtat |
14791252 |
T |
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