View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_43 (Length: 221)

Name: NF18600_low_43
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_43
NF18600_low_43
[»] chr2 (5 HSPs)
chr2 (18-197)||(4923644-4923819)
chr2 (156-195)||(5539069-5539108)
chr2 (156-191)||(8198412-8198447)
chr2 (156-191)||(8203172-8203207)
chr2 (139-188)||(45385920-45385969)
[»] chr8 (4 HSPs)
chr8 (144-191)||(45445256-45445303)
chr8 (138-191)||(8452995-8453048)
chr8 (145-182)||(13800928-13800965)
chr8 (147-195)||(38099096-38099144)
[»] chr6 (4 HSPs)
chr6 (140-195)||(33547727-33547782)
chr6 (138-195)||(16419898-16419955)
chr6 (143-189)||(16419577-16419623)
chr6 (138-191)||(12458457-12458510)
[»] chr4 (3 HSPs)
chr4 (142-195)||(33617959-33618012)
chr4 (145-197)||(22889568-22889620)
chr4 (145-197)||(22941232-22941284)
[»] chr3 (1 HSPs)
chr3 (140-195)||(29835482-29835537)
[»] chr7 (3 HSPs)
chr7 (158-192)||(12264733-12264767)
chr7 (163-195)||(30552007-30552039)
chr7 (141-189)||(41331394-41331442)
[»] chr5 (2 HSPs)
chr5 (140-182)||(31480787-31480829)
chr5 (143-195)||(26325930-26325982)
[»] chr1 (3 HSPs)
chr1 (140-182)||(47035979-47036021)
chr1 (138-195)||(802314-802371)
chr1 (163-195)||(16554304-16554336)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 4923819 - 4923644
Alignment:
Q  18 aaattctagaagtatttaatgttagtgattgattatnnnnnnntctagagatatttaggtgtagctctagtttatatgcctacaaagtatagagatttta 117  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4923819 aaattctagaagtatttaatgttagtgattgattataaaaaaatctagagatatttaggtgtagctctagtttatatgcctacaaaatatagagatttta 4923720  T
Q  118 aaggcttccatagttattaattaggctaaattatattagaggtcctttatgttatttaattgtaataaattggtccttaa 197  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||     ||||||||||||||||||||||||||||||    
T  4923719 aaggcttccatagttattaattaggttaaattatagtagaggtcc----agttatttaattgtaataaattggtccttaa 4923644  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 5539069 - 5539108
Alignment:
Q  156 gaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  5539069 gaggtcctttaagctatttaattgtaataaattggtcctt 5539108  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 8198412 - 8198447
Alignment:
Q  156 gaggtcctttatgttatttaattgtaataaattggt 191  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8198412 gaggtcctttaagttatttaattgtaataaattggt 8198447  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 8203172 - 8203207
Alignment:
Q  156 gaggtcctttatgttatttaattgtaataaattggt 191  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8203172 gaggtcctttaagttatttaattgtaataaattggt 8203207  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 45385969 - 45385920
Alignment:
Q  139 taggctaaattatattagaggtcctttatgttatttaattgtaataaatt 188  Q
    |||||||||||| | ||||||||||||| |||||||||||| || |||||    
T  45385969 taggctaaattacactagaggtcctttaagttatttaattggaacaaatt 45385920  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 45445303 - 45445256
Alignment:
Q  144 taaattatattagaggtcctttatgttatttaattgtaataaattggt 191  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  45445303 taaattattttagatgtcctttaagttatttaattgtaataaattggt 45445256  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 8452995 - 8453048
Alignment:
Q  138 ttaggctaaattatattagaggtcctttatgttatttaattgtaataaattggt 191  Q
    ||||||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||    
T  8452995 ttaggctaaattacactagagatcctttacgttatttcattgtgataaattggt 8453048  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 13800928 - 13800965
Alignment:
Q  145 aaattatattagaggtcctttatgttatttaattgtaa 182  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  13800928 aaattatattagaggtcctttatcttatttatttgtaa 13800965  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 38099144 - 38099096
Alignment:
Q  147 attatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    |||| |||||||||||||||| ||||||| |||||| || |||||||||    
T  38099144 attacattagaggtcctttatcttatttatttgtaacaatttggtcctt 38099096  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 33547727 - 33547782
Alignment:
Q  140 aggctaaattatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    ||||||||||  | ||||||||||||| ||||||||||||||| ||||||||||||    
T  33547727 aggctaaatttcactagaggtcctttaagttatttaattgtaacaaattggtcctt 33547782  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 16419955 - 16419898
Alignment:
Q  138 ttaggctaaattatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    ||||||||||||| ||  ||||||||||| | ||||||||||||| ||||||||||||    
T  16419955 ttaggctaaattacatcggaggtcctttaagctatttaattgtaacaaattggtcctt 16419898  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 16419577 - 16419623
Alignment:
Q  143 ctaaattatattagaggtcctttatgttatttaattgtaataaattg 189  Q
    ||||||||||| ||| |||||||| ||||||||||||||| ||||||    
T  16419577 ctaaattatataagaagtcctttaagttatttaattgtaacaaattg 16419623  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 12458510 - 12458457
Alignment:
Q  138 ttaggctaaattatattagaggtcctttatgttatttaattgtaataaattggt 191  Q
    ||||||||||||| | |||| |||||||| ||||||||||||||| || |||||    
T  12458510 ttaggctaaattacactagaagtcctttaagttatttaattgtaacaatttggt 12458457  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 33618012 - 33617959
Alignment:
Q  142 gctaaattatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    ||||||||| |  ||||||| |||| ||||||||||||||||||||||||||||    
T  33618012 gctaaattacacaagaggtcatttaagttatttaattgtaataaattggtcctt 33617959  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 22889568 - 22889620
Alignment:
Q  145 aaattatattagaggtcctttatgttatttaattgtaataaattggtccttaa 197  Q
    |||||| ||||||| || |||| ||||||||||| ||||||||||||||||||    
T  22889568 aaattacattagagatcatttaagttatttaattataataaattggtccttaa 22889620  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 22941232 - 22941284
Alignment:
Q  145 aaattatattagaggtcctttatgttatttaattgtaataaattggtccttaa 197  Q
    |||||| ||||||| || |||| ||||||||||| ||||||||||||||||||    
T  22941232 aaattacattagagatcatttaagttatttaattataataaattggtccttaa 22941284  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 29835537 - 29835482
Alignment:
Q  140 aggctaaattatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| |  |||||||||    
T  29835537 aggcaaaattatattagaggtcctttatcttatttatttgtaacactttggtcctt 29835482  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 12264733 - 12264767
Alignment:
Q  158 ggtcctttatgttatttaattgtaataaattggtc 192  Q
    ||||||||| |||||||||||||||||||||||||    
T  12264733 ggtcctttaagttatttaattgtaataaattggtc 12264767  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 30552039 - 30552007
Alignment:
Q  163 tttatgttatttaattgtaataaattggtcctt 195  Q
    |||| ||||||||||||||||||||||||||||    
T  30552039 tttaagttatttaattgtaataaattggtcctt 30552007  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 41331442 - 41331394
Alignment:
Q  141 ggctaaattatattagaggtcctttatgttatttaattgtaataaattg 189  Q
    ||||||||||||| | | ||| |||| ||||||||||||||||||||||    
T  41331442 ggctaaattatatcataagtcatttaagttatttaattgtaataaattg 41331394  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 31480787 - 31480829
Alignment:
Q  140 aggctaaattatattagaggtcctttatgttatttaattgtaa 182  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||    
T  31480787 aggcaaaattatattagaggtcctttatcttatttatttgtaa 31480829  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 26325982 - 26325930
Alignment:
Q  143 ctaaattatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    |||||||  ||||||| ||||||| |||||||||||||| |||||| ||||||    
T  26325982 ctaaattgcattagagatcctttaagttatttaattgtattaaattagtcctt 26325930  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 47036021 - 47035979
Alignment:
Q  140 aggctaaattatattagaggtcctttatgttatttaattgtaa 182  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||    
T  47036021 aggcaaaattatattagaggtcctttatcttatttatttgtaa 47035979  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 802371 - 802314
Alignment:
Q  138 ttaggctaaattatattagaggtcctttatgttatttaattgtaataaattggtcctt 195  Q
    ||||||||||| | |  ||| |||||||| ||||||||| ||||||||||||||||||    
T  802371 ttaggctaaatcacacaagacgtcctttaagttatttaaatgtaataaattggtcctt 802314  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 16554304 - 16554336
Alignment:
Q  163 tttatgttatttaattgtaataaattggtcctt 195  Q
    |||| ||||||||||||||||||||||||||||    
T  16554304 tttaagttatttaattgtaataaattggtcctt 16554336  T

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