View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_5 (Length: 493)
Name: NF18600_low_5
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 41693928 - 41693466
Alignment:
| Q |
16 |
atggataagtcctaacaaaacttgattccttcactccacatatcctcaaagatggttttgcacgcagcaactctactcaaacttcatctacaattagcaa |
115 |
Q |
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| T |
41693928 |
atggataagtcctaacaaaacttgattccttcactccacatatcctcaaagatggttttgcacgcagcaactctactcaaacttcatctgcaattagcaa |
41693829 |
T |
|
| Q |
116 |
aacctgcagtagctggtttttcaactaccatatgtgtgctcaagctgttgatgggttttagattcttcaaagatgaagcactttaccaatcaaaattgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41693828 |
aacctgcagtagctggtttttcaactaccatatgtgtgctcaagctgttgatgggttttagattcttcaaagatgaagcactttaccaatcaaaattgtt |
41693729 |
T |
|
| Q |
216 |
tcttttcagattgagtcaaatagctttcaatagtgaacctcaagtttcaactgtacaaagaatggaacgtgctttaagattaatcttcccaacacatgct |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41693728 |
tcttttcagattgagtcaaatagctttcaataatgaacctcaagtttcaactgtacaaagaatggaacgtgctttaagattaatcttcccaacacatgct |
41693629 |
T |
|
| Q |
316 |
actgtcactccttcaattaattcaacttcttcacaggaagagcaagacttgcaaaatgatcaagaggaaatgttctactcgctttcgatgctcgcacttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41693628 |
actgtcactccttcaattaattcaacttcttcacaggaagagcaagacttgcaaaatgatcaagaggaaatgttctactcgctttcaatgctcgcacttt |
41693529 |
T |
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| Q |
416 |
gatcatgtgattatcactcactttgcttggttattannnnnnncatctatttcttttgtattt |
478 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
41693528 |
gatcatgtgattatcactcactttgcttggttattatttttttcatctctttcttttgtattt |
41693466 |
T |
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