View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_low_6 (Length: 476)
Name: NF18600_low_6
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 75 - 339
Target Start/End: Complemental strand, 52912894 - 52912629
Alignment:
| Q |
75 |
tttatgtgtggatttctatctttttctttatgagtctgtgacagaactgtgaaatggcgttgggtgcatgcatcaagctagctagctagctaggctttaa |
174 |
Q |
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| T |
52912894 |
tttatgtgtggatttctatctttttctttatgagtctgtgacagaactgtgaaatggcgttgggtgcat--------caagctagctagctaggctttaa |
52912803 |
T |
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| Q |
175 |
atacagatgaggtgaggatattgattgggtgacggagaaataatacttctcttctctcacacgcaagtgcatgcacgcgttggacaatcttctcctctt- |
273 |
Q |
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| T |
52912802 |
atacagatgaggtgaggatattgattgggtgacgaagaaataatacttctcttctctcacacgcaagtgcatgcacgcgttggacaatcttctcctctta |
52912703 |
T |
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| Q |
274 |
----agagaagagaaggtgatgtttttgttcttgtttgaaaac----aattagacaaatgattggtcgctgcag |
339 |
Q |
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| T |
52912702 |
gagaagagaagagaaggtgatgtttttgttcttgtttgaaaacaattaattagacaaatgattggtcgttgcag |
52912629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 467
Target Start/End: Complemental strand, 52912584 - 52912541
Alignment:
| Q |
424 |
tttaagttttaaaaactaaagcaatttccaagttgtgatgatgt |
467 |
Q |
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| T |
52912584 |
tttaagttttaaaaactaaagcaatttccaggttgtgatgatgt |
52912541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 52912930 - 52912891
Alignment:
| Q |
20 |
aagtgaatgagtcatttaatttggtggtgggtttagttta |
59 |
Q |
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| T |
52912930 |
aagtgaatgagtcatttaatttggtggtgggtttagttta |
52912891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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