View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_low_9 (Length: 453)

Name: NF18600_low_9
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_low_9
NF18600_low_9
[»] chr6 (6 HSPs)
chr6 (4-436)||(6697917-6698350)
chr6 (79-158)||(30127398-30127478)
chr6 (80-156)||(33549104-33549181)
chr6 (123-156)||(14557962-14557995)
chr6 (80-156)||(21418470-21418547)
chr6 (123-156)||(31623034-31623067)
[»] scaffold0258 (1 HSPs)
scaffold0258 (80-156)||(15322-15399)
[»] chr8 (8 HSPs)
chr8 (80-156)||(35641900-35641977)
chr8 (80-158)||(6530805-6530883)
chr8 (80-156)||(28783060-28783137)
chr8 (80-156)||(968362-968439)
chr8 (104-156)||(6436578-6436631)
chr8 (80-156)||(16852340-16852417)
chr8 (119-152)||(33692341-33692374)
chr8 (126-158)||(26848559-26848591)
[»] chr5 (9 HSPs)
chr5 (81-156)||(22737082-22737158)
chr5 (118-158)||(8278313-8278353)
chr5 (82-152)||(16436622-16436692)
chr5 (80-156)||(16773807-16773884)
chr5 (123-156)||(21589288-21589321)
chr5 (123-156)||(30883241-30883274)
chr5 (123-156)||(34984806-34984839)
chr5 (118-158)||(3252327-3252367)
chr5 (123-159)||(14495848-14495884)
[»] chr4 (16 HSPs)
chr4 (80-146)||(30557269-30557336)
chr4 (118-158)||(19238615-19238655)
chr4 (123-157)||(9241068-9241102)
chr4 (80-158)||(19229207-19229285)
chr4 (119-157)||(46545710-46545748)
chr4 (104-152)||(4911255-4911304)
chr4 (119-156)||(10538806-10538843)
chr4 (119-152)||(13901746-13901779)
chr4 (123-156)||(51250565-51250598)
chr4 (123-156)||(55427243-55427276)
chr4 (120-156)||(20608922-20608958)
chr4 (120-156)||(21660184-21660220)
chr4 (120-156)||(21668948-21668984)
chr4 (118-158)||(31759696-31759736)
chr4 (123-159)||(37109394-37109430)
chr4 (124-156)||(49225474-49225506)
[»] chr2 (8 HSPs)
chr2 (118-156)||(19016031-19016069)
chr2 (76-156)||(29197371-29197452)
chr2 (119-156)||(30808686-30808723)
chr2 (120-156)||(35916086-35916122)
chr2 (123-156)||(3697442-3697475)
chr2 (120-157)||(5147719-5147756)
chr2 (80-156)||(35710391-35710468)
chr2 (123-156)||(37480075-37480108)
[»] scaffold0517 (1 HSPs)
scaffold0517 (119-156)||(7765-7802)
[»] chr7 (14 HSPs)
chr7 (119-156)||(30579335-30579372)
chr7 (80-160)||(43590903-43590984)
chr7 (123-159)||(22760860-22760896)
chr7 (118-156)||(2446308-2446346)
chr7 (118-156)||(41487362-41487400)
chr7 (123-156)||(4161288-4161321)
chr7 (80-156)||(20335830-20335907)
chr7 (123-156)||(22702240-22702273)
chr7 (123-156)||(22932754-22932787)
chr7 (104-152)||(23595733-23595782)
chr7 (120-157)||(24513796-24513833)
chr7 (123-156)||(43215184-43215217)
chr7 (123-156)||(48125217-48125250)
chr7 (119-155)||(12424977-12425013)
[»] chr3 (14 HSPs)
chr3 (123-156)||(36720381-36720414)
chr3 (75-155)||(47454611-47454692)
chr3 (124-157)||(47810788-47810821)
chr3 (124-156)||(2597264-2597296)
chr3 (123-156)||(8051214-8051247)
chr3 (123-156)||(10499152-10499185)
chr3 (123-156)||(24459990-24460023)
chr3 (123-156)||(24478155-24478188)
chr3 (118-159)||(31510756-31510797)
chr3 (120-157)||(40286897-40286934)
chr3 (123-156)||(47079701-47079734)
chr3 (120-156)||(5499447-5499483)
chr3 (119-159)||(10538298-10538338)
chr3 (119-159)||(10682982-10683022)
[»] chr1 (10 HSPs)
chr1 (119-156)||(37400274-37400311)
chr1 (119-156)||(40257399-40257436)
chr1 (80-158)||(18037612-18037691)
chr1 (118-156)||(21694446-21694484)
chr1 (104-153)||(26232409-26232459)
chr1 (120-158)||(44961763-44961801)
chr1 (123-156)||(2219972-2220005)
chr1 (123-156)||(19528370-19528403)
chr1 (123-156)||(37046985-37047018)
chr1 (118-159)||(52116819-52116860)
[»] scaffold0260 (1 HSPs)
scaffold0260 (123-158)||(15364-15399)
[»] scaffold0118 (1 HSPs)
scaffold0118 (120-158)||(41673-41711)
[»] scaffold0070 (1 HSPs)
scaffold0070 (123-153)||(38945-38975)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 436
Target Start/End: Original strand, 6697917 - 6698350
Alignment:
Q  4 tggacgatttatcttctttttaccgaatcaacattaatcacgtcnnnnnnnnnnnnnnnnnnaagaagctatgggaagaatcgaacatgagacatcggaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||| |||| || |||    
T  6697917 tggacgatttatcttctttttaccgaatcaacattaatcacgtcttttatttttaattttttaagaagctatgggaagaatcgaacataagacctcagaa 6698016  T
Q  104 aggagcacaatcctagtctcaagccaataccaccagaccaacccaagtgggttaatcacgtcattgtctgagtaatagtgtgtaacatcggttatcgagt 203  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6698017 aggagcacaattctaatctcaagccaataccaccagaccaacccgaataggttaatcacgtcattgtctgagtaatagtgcgtaacatcggttatcgagt 6698116  T
Q  204 cattttcaaacctaggtccactataaaccatatcatatgtcaccattctagcaattgtcct-caaacttagtgttgttatggagccatatctcactggaa 302  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6698117 aattttcaaacctaggtccactataaaccatatcatatgtcaccattctagcaattgtccttcaaacttagtgttgttatggagccatatctcactggaa 6698216  T
Q  303 agtggcatagtgagcattaattttaatgttggctgtgtaactgaagaaggaggaggggtccggtgagtttgcaataacccaatgttccctttggcgttgc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6698217 agtggcatagtgagcattaattttaatgttggctgtgtaactgaaggaggaggaggggtccggtgagtttgcaataacccaatgttccctttggcgttgc 6698316  T
Q  403 ataattcagcacataaaaaactgcaccaaaagta 436  Q
    |||||||||| |||||||||||||||||||||||    
T  6698317 ataattcagcgcataaaaaactgcaccaaaagta 6698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 30127478 - 30127398
Alignment:
Q  79 aagaatcgaacatgagacatcggaaaggagcacaatcctagtctc-aagccaataccaccagaccaacccaagtgggttaa 158  Q
    ||||||||||| |||||| ||| | ||||||||| ||| || | | |||||||||||||||||||||||||||||||||||    
T  30127478 aagaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggttaa 30127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 33549181 - 33549104
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||| |||   ||||||||| ||| || || ||||||||||||||||||||||||||||||||||    
T  33549181 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 14557995 - 14557962
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||| |||||||||||||||||||||||||    
T  14557995 caagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 21418547 - 21418470
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||||| |   ||||||||| ||| | ||| ||||||||||||||||| ||||||||| ||||||    
T  21418547 agaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 21418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 31623034 - 31623067
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||| ||||||||||||||||||    
T  31623034 caagccaataccaccggaccaacccaagtgggtt 31623067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 15322 - 15399
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||| |||   ||||||||| ||| || || ||||||||||||||||||||||||||||||||||    
T  15322 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 35641900 - 35641977
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| ||||||||||   ||||||||| ||| |  ||||||||| |||||||||||||||||||||||||||    
T  35641900 agaatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggtt 35641977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 6530883 - 6530805
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||||||||| |||||||| | | ||||||||| |||||| || |||||||| |||||||| ||||||||||||||||||    
T  6530883 agaatcgaacctgagacattg-agaggagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggttaa 6530805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 28783137 - 28783060
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| | |   ||||||||| ||| || |||||||||||||||||||  ||||||||||||||||    
T  28783137 agaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 968439 - 968362
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||| |||   ||||||||| ||| || || ||||||||||||||||| ||||| ||||||||||    
T  968439 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 6436578 - 6436631
Alignment:
Q  104 aggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||| ||||| ||| |||||||||||||||||  |||||||||||||||    
T  6436578 aggagcacactcctaagtcccaagccaataccaccagggcaacccaagtgggtt 6436631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 16852417 - 16852340
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||| |||   ||||||||| ||| || || |||||||||||||| || ||||||||||||||||    
T  16852417 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 33692341 - 33692374
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtg 152  Q
    |||||||||||||||||||| |||||||||||||    
T  33692341 gtctcaagccaataccaccaaaccaacccaagtg 33692374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 26848559 - 26848591
Alignment:
Q  126 gccaataccaccagaccaacccaagtgggttaa 158  Q
    |||||||||||||||||||| ||||||||||||    
T  26848559 gccaataccaccagaccaactcaagtgggttaa 26848591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 22737158 - 22737082
Alignment:
Q  81 gaatcgaacatgagacatcggaaaggagcacaat-cctagtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||| |||||||| ||  ||||||||| | || |||| |||||||||||||| |||||||||||||||||||    
T  22737158 gaatcgaacctgagacattggggaggagcacacttccaagtcccaagccaataccactagaccaacccaagtgggtt 22737082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 8278313 - 8278353
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  8278313 agtcccaagccaataccatcagaccaacccaagtgggttaa 8278353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 16436692 - 16436622
Alignment:
Q  82 aatcgaacatgagacatcggaaaggagcacaatcctagtctcaagccaataccaccagaccaacccaagtg 152  Q
    ||||||||||||||| | |   ||||||||| ||| |||| |||||||||||||| || ||||||||||||    
T  16436692 aatcgaacatgagaccttgaggaggagcacactccaagtcccaagccaataccactaggccaacccaagtg 16436622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 16773884 - 16773807
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||| |||   ||||||||| ||| || || |||| |||||||||||||||||| ||||||||||    
T  16773884 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 21589321 - 21589288
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  21589321 caagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 30883241 - 30883274
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||| |||||||||||||||||||    
T  30883241 caagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 34984839 - 34984806
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||| |||||||||||||||||||    
T  34984839 caagccaataccactagaccaacccaagtgggtt 34984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 3252327 - 3252367
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    ||||||||| ||||||||| || ||||||||||||||||||    
T  3252327 agtctcaagtcaataccactaggccaacccaagtgggttaa 3252367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 14495848 - 14495884
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||| |||||||||||||||||||||| |||||||||    
T  14495848 caagtcaataccaccagaccaacccaaatgggttaat 14495884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 30557269 - 30557336
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacc 146  Q
    ||||||||||||||| | ||| ||||||||||| ||||| ||| |||| |||||||||||||||||||    
T  30557269 agaatcgaacatgagccctcgaaaaggagcacactcctacgtcccaagtcaataccaccagaccaacc 30557336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 19238615 - 19238655
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  19238615 agtcccaagccaataccaccaggccaacccaagtgggttaa 19238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 9241068 - 9241102
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtta 157  Q
    ||||||||||||||||| |||||||||||||||||    
T  9241068 caagccaataccaccaggccaacccaagtgggtta 9241102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 19229207 - 19229285
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcctagtctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||||||||| |||||| |||   ||||||||| ||  |||| || |||||||||||||| ||||||||| ||||||||    
T  19229207 agaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccaggccaacccaaatgggttaa 19229285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 46545748 - 46545710
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtta 157  Q
    |||||||||||||||||| || |||||||||||||||||    
T  46545748 gtctcaagccaataccactaggccaacccaagtgggtta 46545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 4911255 - 4911304
Alignment:
Q  104 aggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtg 152  Q
    ||||||||| ||||| ||| ||||| ||||||||||||||||||||||||    
T  4911255 aggagcacactcctaagtcccaagctaataccaccagaccaacccaagtg 4911304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 10538843 - 10538806
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  10538843 gtctcaagccaacaccaccagaccaactcaagtgggtt 10538806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 13901779 - 13901746
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtg 152  Q
    |||||||||||||||||| |||||||||||||||    
T  13901779 gtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 51250565 - 51250598
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  51250565 caagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 55427243 - 55427276
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  55427243 caagccaataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 20608958 - 20608922
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||| |||| |||||||||||||||    
T  20608958 tctcaagccaataccatcagatcaacccaagtgggtt 20608922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 21660184 - 21660220
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21660184 tctcaagtcaataccaccagaccaacccaagttggtt 21660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 21668948 - 21668984
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21668948 tctcaagtcaataccaccagaccaacccaagttggtt 21668984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 31759696 - 31759736
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  31759696 agtcccaagccaataccactagatcaacccaagtgggttaa 31759736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 37109394 - 37109430
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||||||||||||| || |||||||||||||||||||    
T  37109394 caagccaataccactaggccaacccaagtgggttaat 37109430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 49225474 - 49225506
Alignment:
Q  124 aagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||| |||||||||||||||||||||||||    
T  49225474 aagccaacaccaccagaccaacccaagtgggtt 49225506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 19016069 - 19016031
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  19016069 agtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 29197371 - 29197452
Alignment:
Q  76 gggaagaatcgaacatgagacatcggaaaggagcacaat-cctagtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||||||    ||||||||| | || |||| |||| |||||||||||  ||||||||||||||||    
T  29197371 gggaagaatcgaacatgagacatcaaggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggtt 29197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 30808686 - 30808723
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||| |||||||||||||||||||||||    
T  30808686 gtctcaagccaatatcaccagaccaacccaagtgggtt 30808723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 35916122 - 35916086
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35916122 tctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 3697442 - 3697475
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||| ||||||||||||||||||||    
T  3697442 caagccaataccatcagaccaacccaagtgggtt 3697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 5147719 - 5147756
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtta 157  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  5147719 tctcaagtcaataccactagaccaacccaagtgggtta 5147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 35710468 - 35710391
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatcct-agtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||  | |||| |||| |||| ||||||||| |||| |||||||| |||| ||||||||||    
T  35710468 agaatcgaacatgagacctcaaagaggaacacactcctaagtctcaagtcaatcccaccagatcaactcaagtgggtt 35710391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 37480108 - 37480075
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  37480108 caagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 7765 - 7802
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  7765 gtctcaagccaataccaccagaccaacccaagttggtt 7802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 30579372 - 30579335
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  30579372 gtctcaagccaataccaccaggccaacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 43590984 - 43590903
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggttaatc 160  Q
    |||||||||| |||||||| |   ||||||||| ||| | ||| ||||||||||||||||| ||||||||| ||||||||||    
T  43590984 agaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttaatc 43590903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 22760896 - 22760860
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||| ||||||||||||||||||||||||||||||||    
T  22760896 caagtcaataccaccagaccaacccaagtgggttaat 22760860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 2446346 - 2446308
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  2446346 agtcccaagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 41487400 - 41487362
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  41487400 agtcccaagccaataccaccaggccaacccaagtgggtt 41487362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 4161321 - 4161288
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||||||||| ||||||    
T  4161321 caagccaataccaccagaccaacccaaatgggtt 4161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 20335830 - 20335907
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||| |||||| |||   ||||||||| ||| | ||| |||||||||||| | |||||||||||||||||||    
T  20335830 agaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 22702273 - 22702240
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||||||||| |||||||||||    
T  22702273 caagccaataccaccagaccaatccaagtgggtt 22702240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 22932754 - 22932787
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||| |||||||||||||||||    
T  22932754 caagccaataccaccataccaacccaagtgggtt 22932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 23595782 - 23595733
Alignment:
Q  104 aggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtg 152  Q
    ||||||||| ||| || ||||||| |||||||||||||||||||||||||    
T  23595782 aggagcacactccgagatctcaagtcaataccaccagaccaacccaagtg 23595733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 24513833 - 24513796
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtta 157  Q
    ||||||||||||||||| || |||||||||||||||||    
T  24513833 tctcaagccaataccactaggccaacccaagtgggtta 24513796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 43215217 - 43215184
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||| |||||||||||||||||||    
T  43215217 caagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 48125217 - 48125250
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||| |||||||||||||||||||||||||    
T  48125217 caagccaacaccaccagaccaacccaagtgggtt 48125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 12425013 - 12424977
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggt 155  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  12425013 gtctcaagccaacaccaccagaccaatccaagtgggt 12424977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 36720414 - 36720381
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||||||||||||||||    
T  36720414 caagccaataccaccagaccaacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 47454611 - 47454692
Alignment:
Q  75 tgggaagaatcgaacatgagacatcggaaaggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgggt 155  Q
    |||| |||||||||| |||||| |||   ||||||||| ||| || ||||||||||||||||| ||| ||||||||||||||    
T  47454611 tggggagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 47810788 - 47810821
Alignment:
Q  124 aagccaataccaccagaccaacccaagtgggtta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  47810788 aagccaataccaccagaccaacccaagtgggtta 47810821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 2597264 - 2597296
Alignment:
Q  124 aagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||||||||||||||||||||    
T  2597264 aagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 8051247 - 8051214
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  8051247 caagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 10499152 - 10499185
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  10499152 caagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 24460023 - 24459990
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  24460023 caagccaataccaccaggccaacccaagtgggtt 24459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 24478188 - 24478155
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||| |||||||||||||||||    
T  24478188 caagccaataccaccaaaccaacccaagtgggtt 24478155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 31510756 - 31510797
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||| |||| ||||||||||||||||||| ||||||||||||    
T  31510756 agtcccaagtcaataccaccagaccaacctaagtgggttaat 31510797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 40286897 - 40286934
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtta 157  Q
    |||||||| || ||||||||||||||||||||||||||    
T  40286897 tctcaagcgaacaccaccagaccaacccaagtgggtta 40286934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 47079734 - 47079701
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||| |||||||||||||||||||||||||    
T  47079734 caagccaacaccaccagaccaacccaagtgggtt 47079701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 5499447 - 5499483
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5499447 tctcaagtcaataccaccaggccaacccaagtgggtt 5499483  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 10538298 - 10538338
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  10538298 gtctcaagccaataccactagatcaacccaagtgggataat 10538338  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 10682982 - 10683022
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  10682982 gtctcaagccaataccactagatcaacccaagtgggataat 10683022  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 37400311 - 37400274
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  37400311 gtctcaagccaataccaccagaccaacccaagttggtt 37400274  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 40257436 - 40257399
Alignment:
Q  119 gtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40257436 gtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 18037612 - 18037691
Alignment:
Q  80 agaatcgaacatgagacatcggaaaggagcacaatccta-gtctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||||||||| |||||  ||| ||||||||||| ||| | ||| ||| |||||| || ||||||||||||||||||||||    
T  18037612 agaatcgaacttgagatctcgaaaaggagcacactcccaagtcccaaaccaatatcatcagaccaacccaagtgggttaa 18037691  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 21694484 - 21694446
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  21694484 agtctcaagccaataccaccaggtcaacccaagtgggtt 21694446  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 26232409 - 26232459
Alignment:
Q  104 aggagcacaatcctag-tctcaagccaataccaccagaccaacccaagtgg 153  Q
    ||||||||| ||| || ||||||||||||||||| ||||||||||||||||    
T  26232409 aggagcacactcccagatctcaagccaataccactagaccaacccaagtgg 26232459  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 44961801 - 44961763
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  44961801 tctcaagctaataccacctgaccaacccaagtgggttaa 44961763  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 2220005 - 2219972
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||||||||||||| |||||||||||||||    
T  2220005 caagccaataccaccagaacaacccaagtgggtt 2219972  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 19528370 - 19528403
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    ||||||||||||||||| ||||||||||||||||    
T  19528370 caagccaataccaccaggccaacccaagtgggtt 19528403  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 37047018 - 37046985
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggtt 156  Q
    |||||||| |||||||||||||||||||||||||    
T  37047018 caagccaacaccaccagaccaacccaagtgggtt 37046985  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 52116819 - 52116860
Alignment:
Q  118 agtctcaagccaataccaccagaccaacccaagtgggttaat 159  Q
    |||| ||||||||||||||||| ||||||||| |||||||||    
T  52116819 agtcccaagccaataccaccaggccaacccaactgggttaat 52116860  T

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Target: scaffold0260 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 15364 - 15399
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgggttaa 158  Q
    |||||||| |||||||||||||||||||||||||||    
T  15364 caagccaacaccaccagaccaacccaagtgggttaa 15399  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 41673 - 41711
Alignment:
Q  120 tctcaagccaataccaccagaccaacccaagtgggttaa 158  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  41673 tctcaagccaataccactaggccaacccaagtgggttaa 41711  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 38945 - 38975
Alignment:
Q  123 caagccaataccaccagaccaacccaagtgg 153  Q
    |||||||||||||||||||||||||||||||    
T  38945 caagccaataccaccagaccaacccaagtgg 38975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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