View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_high_4 (Length: 440)
Name: NF18601_high_4
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 27847881 - 27848289
Alignment:
| Q |
13 |
aaaatctatcatgcacgttaaaatcatactatgttgcgctactatcggtacaaattcttcggtgttctatatcaacaagtttttatattttcatttcaat |
112 |
Q |
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| T |
27847881 |
aaaatctatcatgcacgttaaaatcacactatgttgcgctactatcggtacaaattcttcggtgttctatatcaacaagtttttctattttcattttaat |
27847980 |
T |
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| Q |
113 |
tagtcttttaatagtatcattctatcttgtattaattatcacatctaatatgtgggacagcacgtcacaaaatgcgcatttgcactacttcatggcctag |
212 |
Q |
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| T |
27847981 |
tagtcttt-aatagtatcattctatcttgtattaattatccattctaatatgtgggacggcacgtcacaaaatgcgcatttgcactacttcatggcctag |
27848079 |
T |
|
| Q |
213 |
tttcattcctataaataccagtcttatgaattcttaaacctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttctcagtatcgt |
312 |
Q |
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| T |
27848080 |
tttcattcctataaataccagtcttatgaattcttaaacctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttcttagtatcgt |
27848179 |
T |
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| Q |
313 |
tctctttgtgttgttgggcttaagcataagttctgctgccagaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaagga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27848180 |
tctctttgtgttgttgggcttaagcataagttctgctgccagaaaactcattgttggggatgtaggtggaggatatggatatgccggaccaggcgaagga |
27848279 |
T |
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| Q |
413 |
ggtgatggat |
422 |
Q |
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|||||||||| |
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| T |
27848280 |
ggtgatggat |
27848289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 27857985 - 27858062
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
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|||||||||||||||||||| || || |||||||||||||||||| |||||||| |||||||| | ||||||||| |
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| T |
27857985 |
atggcaacttcgaaagttctaagcatttctctctttgtgttgttgggtttaagcatgtgttctgctactagaaaactc |
27858062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 361
Target Start/End: Original strand, 27871996 - 27872105
Alignment:
| Q |
252 |
ctcagttgtgtaggatttcaacaattttacaaatggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgc |
351 |
Q |
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| T |
27871996 |
ctcagttgtgtaagattcaaacaaaatttcatatggcaacttcgaaagttctaagcattgctatctttgtgctgttgggtttaagcatgtgttctgctac |
27872095 |
T |
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| Q |
352 |
cagaaaactc |
361 |
Q |
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||||||||| |
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| T |
27872096 |
tagaaaactc |
27872105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 27884265 - 27884342
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
| |
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||||||||||| |||||||| || || | |||||||||| ||||||| |||||||| |||||||| | ||||||||| |
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| T |
27884265 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27884342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 27885545 - 27885622
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
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| T |
27885545 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27885622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 27967458 - 27967535
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
| |
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||||||||||| |||||||| || || | |||||||||| ||||||| |||||||| |||||||| | ||||||||| |
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| T |
27967458 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27967535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 27979521 - 27979598
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
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| T |
27979521 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
27979598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 28024444 - 28024521
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
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||||||||||| |||||||| || || | |||||||||| ||||||| |||||||| |||||||| | ||||||||| |
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| T |
28024444 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
28024521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 28036790 - 28036867
Alignment:
| Q |
284 |
atggcaacttcgaaagttctcagtatcgttctctttgtgttgttgggcttaagcataagttctgctgccagaaaactc |
361 |
Q |
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||||||||||| |||||||| || || | |||||||||| ||||||| |||||||| |||||||| | ||||||||| |
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| T |
28036790 |
atggcaacttcaaaagttctaagcattgctctctttgtgctgttgggtttaagcatgtgttctgctactagaaaactc |
28036867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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