View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18601_high_7 (Length: 320)

Name: NF18601_high_7
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18601_high_7
NF18601_high_7
[»] chr3 (18 HSPs)
chr3 (6-308)||(46554276-46554591)
chr3 (11-306)||(46531644-46531953)
chr3 (185-306)||(46483961-46484082)
chr3 (179-293)||(46538892-46539006)
chr3 (179-300)||(46544364-46544485)
chr3 (130-306)||(46473787-46473963)
chr3 (124-306)||(46479642-46479824)
chr3 (123-250)||(16025332-16025459)
chr3 (194-308)||(45902876-45902990)
chr3 (122-266)||(5160125-5160268)
chr3 (131-250)||(46490568-46490687)
chr3 (122-308)||(45883824-45884010)
chr3 (196-306)||(46549078-46549188)
chr3 (185-250)||(51943803-51943868)
chr3 (186-306)||(46526516-46526635)
chr3 (124-266)||(5156097-5156239)
chr3 (123-203)||(47414380-47414460)
chr3 (229-304)||(4613932-4614007)
[»] chr7 (6 HSPs)
chr7 (124-305)||(17735779-17735960)
chr7 (124-305)||(17708125-17708306)
chr7 (130-305)||(17717955-17718130)
chr7 (130-303)||(17744966-17745139)
chr7 (124-306)||(16722002-16722184)
chr7 (124-306)||(17699016-17699198)
[»] chr4 (3 HSPs)
chr4 (122-236)||(15555862-15555976)
chr4 (194-306)||(35162361-35162473)
chr4 (187-251)||(35155333-35155397)
[»] chr8 (1 HSPs)
chr8 (187-306)||(21464281-21464400)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 46554591 - 46554276
Alignment:
Q  6 attaattttatatttgatgttgtctaaagcctgatgaagctgtcaaaaaagtgaatttatgggctacagaaaagacaaacggacttattactgatgttct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46554591 attaattttatatttgatgttgtctaaagcctgatgaagctgtcaaaaaagtgaatttatgggctacagaaaagacaaacggacttattactgatgttct 46554492  T
Q  106 ttcgtgcgggtcaattga-------------ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaa 192  Q
    ||||||||||||||||||             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46554491 ttcgtgcgggtcaattgatagtttaaccagactcatttttgctaatgcactatattttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaa 46554392  T
Q  193 gactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtcc 292  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46554391 gactatgattttcaccttcttgatggtagctcattcaaggttcccttcaagaccagcagggagagtcagtttatcagtgtttttgatggttttaaggtcc 46554292  T
Q  293 ttggtcttccttatga 308  Q
    || |||||||||||||    
T  46554291 ttcgtcttccttatga 46554276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 46531644 - 46531953
Alignment:
Q  11 ttttatatttgatgttgtc-taaagcctgatgaagctgtcaaaaaagtgaatttatgggctacagaaaagacaaacggacttattactgatgttctttcg 109  Q
    |||||||||||||| |||| ||||| |||||||||| |||||||||||||||  |||||||| | || |||||||||||| ||||  ||||||||||||     
T  46531644 ttttatatttgatgctgtcgtaaaggctgatgaagccgtcaaaaaagtgaatgcatgggctaaaaaagagacaaacggacgtattggtgatgttctttca 46531743  T
Q  110 tgcgggtcaattga-------------ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagact 196  Q
       |||||||||||             |||||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||| |||||||||||     
T  46531744 cctgggtcaattgatagcttaactggactcatttttgctaatgcactctactttaatggagcatggcatcaaccatttgatgcttcaaaaacaaaagacc 46531843  T
Q  197 atgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttgg 296  Q
    |||||||||||||||| | ||| |||||| | |||||||||||||||||||||| | |||  |||||||| | || |||||||||||||||| ||||| |    
T  46531844 atgattttcaccttctcggtggcagctcaattaaggttcccttcatgactagcaagaagaagcagtttataaatgcttttgatggttttaagatccttcg 46531943  T
Q  297 tcttccttat 306  Q
    ||||||||||    
T  46531944 tcttccttat 46531953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 46483961 - 46484082
Alignment:
Q  185 aaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttt 284  Q
    ||||||||||||||||||||||||||||  |||| |||||| ||||||||||||| |||||||||| | |||  |||||||| || | ||||||||||||    
T  46483961 aaacaaaagactatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatggttt 46484060  T
Q  285 taaggtccttggtcttccttat 306  Q
    ||| || |||||||||||||||    
T  46484061 taaagttcttggtcttccttat 46484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 46538892 - 46539006
Alignment:
Q  179 cttcagaaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttga 278  Q
    ||||| |||||||||||||||||||| |||||||  |||| |||||| ||||||||||||||||||| ||| ||||| | ||  |||| |||||||||||    
T  46538892 cttcaaaaacaaaagactatgattttaaccttcttaatggcagctcagtcaaggttcccttcatgacaagccgggagtgacaacttattagtgtttttga 46538991  T
Q  279 tggttttaaggtcct 293  Q
    ||||||||| |||||    
T  46538992 tggttttaaagtcct 46539006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 46544364 - 46544485
Alignment:
Q  179 cttcagaaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttga 278  Q
    ||||| |||||||||||||||||||| |||||||  |||| |||  | |||||||||| |||||||| |||| | |||| || |||||||||||||||||    
T  46544364 cttcaaaaacaaaagactatgattttaaccttctcaatggcagccaagtcaaggttcctttcatgacaagcatgaagagacaatttatcagtgtttttga 46544463  T
Q  279 tggttttaaggtccttggtctt 300  Q
    ||||||||| |||||| |||||    
T  46544464 tggttttaaagtccttcgtctt 46544485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 130 - 306
Target Start/End: Original strand, 46473787 - 46473963
Alignment:
Q  130 tttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagctcattca 229  Q
    |||||||||||| | || ||||||||  ||||| ||||   | |||| ||||||  ||||||||||||||||||| |||||||  |||| |||||| | |    
T  46473787 tttgctaatgcattgtattttaaaggatcatggaatcagaagattgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagtta 46473886  T
Q  230 aggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttccttat 306  Q
    ||||| |||| |||||||||| | |||  |||||||| || | ||||||||||||||| || |||||||||||||||    
T  46473887 aggtttcctttatgactagcaagaagaagcagtttattagagcttttgatggttttaaagttcttggtcttccttat 46473963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 46479642 - 46479824
Alignment:
Q  124 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 223  Q
    ||||| ||||| |||||||||||||| ||||| || ||| || |   |||||| |||||| ||||  ||||||| || ||||||||| |  ||||||||     
T  46479642 ctcatctttgccaatgcactatacttcaaaggagcgtggaatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagcc 46479741  T
Q  224 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttccttat 306  Q
    || ||||||||||||||||||| |||| | |||  |||||||| || | ||||||||||||||| || || ||||||||||||    
T  46479742 cagtcaaggttcccttcatgaccagcaagaagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttat 46479824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 16025332 - 16025459
Alignment:
Q  123 actcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagc 222  Q
    |||||| |||||||||||||| ||||||||||| |  ||| |||||| |||||| ||||| |||||||||||||||||||||||| ||||  |||| | |    
T  16025332 actcatatttgctaatgcactttactttaaaggggtgtgggatcaacagtttgatgcttcggaaacaaaagactatgattttcacattctgaatggcaac 16025431  T
Q  223 tcattcaaggttcccttcatgactagca 250  Q
      | |||| |||||||||||||| ||||    
T  16025432 gtaatcaaagttcccttcatgaccagca 16025459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 45902876 - 45902990
Alignment:
Q  194 actatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtcct 293  Q
    ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||| |||  | |||| ||||||||| | ||||| |||||||| || || ||    
T  45902876 actataatttttaccttctaaatggtagctcagtcaaggttcccttcatgaccagcgagaagaggcagtttatccgcgttttcgatggtttcaaagtact 45902975  T
Q  294 tggtcttccttatga 308  Q
    | |||||||||||||    
T  45902976 tcgtcttccttatga 45902990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 5160125 - 5160268
Alignment:
Q  122 gactcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtag 221  Q
    ||||||| |||||||||||||| ||||||||||| ||||||  | |   |||||| | |||  |||| ||||||||||||||||||||| |  |||| ||    
T  5160125 gactcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgtttcgaaaacgaaagactatgattttcaccttttgaatgg-ag 5160223  T
Q  222 ctcattcaaggttcccttcatgactagcagggagagtcagtttat 266  Q
    |||| ||||||||||||||||||| |||  ||||| |||||||||    
T  5160224 ctcagtcaaggttcccttcatgaccagcgaggagaatcagtttat 5160268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 46490568 - 46490687
Alignment:
Q  131 ttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagctcattcaa 230  Q
    ||||||||||||||||||| ||||| |  ||| || |   |||||| |||||| |||| ||||||||||||||||||||| |  |||| |||||| | ||    
T  46490568 ttgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaaagactatgattttcaccttttgaatggcagctcaattaa 46490667  T
Q  231 ggttcccttcatgactagca 250  Q
    ||||||||||||||||||||    
T  46490668 ggttcccttcatgactagca 46490687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 308
Target Start/End: Complemental strand, 45884010 - 45883824
Alignment:
Q  122 gactcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtag 221  Q
    ||||||| |||||||||||| | |||||||| || |||||| |||||||||||||  ||||  |||||||| |||| ||||||||  |||   |||||||    
T  45884010 gactcatatttgctaatgcattgtactttaagggagcatggaatcaaccgtttgatccttcgaaaacaaaatactacgattttcatattcataatggtag 45883911  T
Q  222 ctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttccttatga 308  Q
     ||| |||| |||||||||||||| |||| | |   ||| ||||| || | ||||||||||||||| || ||| || | ||||||||    
T  45883910 ttcagtcaaagttcccttcatgaccagcaagaaagatcaatttattagagcttttgatggttttaaagtgctttgtatcccttatga 45883824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 46549188 - 46549078
Alignment:
Q  196 tatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttg 295  Q
    |||||||||||||||||  |||| |||||  |||||||||||||||| || |||||| |   ||||||||||||||||||||||||||| || || |||     
T  46549188 tatgattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagcaggaatgatcagtttatcagtgtttttgatggtttcaaagttcttt 46549089  T
Q  296 gtcttccttat 306  Q
     ||||||||||    
T  46549088 atcttccttat 46549078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 51943803 - 51943868
Alignment:
Q  185 aaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagca 250  Q
    |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  51943803 aaactaaagattatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagca 51943868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 46526635 - 46526516
Alignment:
Q  186 aacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggtttt 285  Q
    ||||||| ||||||||||||||||| || |||| |||||| ||||||||||||||||||| |||  | | || || |||||||||||||| ||||||||     
T  46526635 aacaaaaaactatgattttcacctt-taaatggcagctcagtcaaggttcccttcatgaccagcgagaatagacaatttatcagtgttttcgatggtttc 46526537  T
Q  286 aaggtccttggtcttccttat 306  Q
    || || ||  |||||||||||    
T  46526536 aaagtactccgtcttccttat 46526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 5156097 - 5156239
Alignment:
Q  124 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 223  Q
    ||||| |||||||||||||| ||||||||||| ||||||  | |   |||||| | ||   |||| ||||||||||||||||||||| |  |||| ||||    
T  5156097 ctcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagct 5156196  T
Q  224 cattcaaggttcccttcatgactagcagggagagtcagtttat 266  Q
    |  ||||||||||||||||||| |||  ||||| |||||||||    
T  5156197 cggtcaaggttcccttcatgaccagcgaggagaatcagtttat 5156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 47414460 - 47414380
Alignment:
Q  123 actcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattt 203  Q
    |||||| |||||||||||||| ||||| ||||| |  ||| ||||||  ||||| ||||| |||||||||||||| |||||    
T  47414460 actcatctttgctaatgcactgtacttcaaaggggtgtggaatcaacaatttgatgcttcggaaacaaaagactacgattt 47414380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 4614007 - 4613932
Alignment:
Q  229 aaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttcctt 304  Q
    ||||||||||||||||||||  | |||   ||||||||| |||||||||||| ||||||| | ||| |||||||||    
T  4614007 aaggttcccttcatgactagttgtgaggagcagtttatcggtgtttttgatgattttaagattcttcgtcttcctt 4613932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 17735779 - 17735960
Alignment:
Q  124 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 223  Q
    ||||| ||||| |||||||||||||| ||||| |  ||| | | |||||||||  ||||| |||| || |||||||||||| |||||||  |||| |  |    
T  17735779 ctcatctttgcgaatgcactatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagt 17735878  T
Q  224 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttcctta 305  Q
    || | ||||||||||| ||||| |||| | | | |||||||||||||  ||||||||||||||| |||||||||||||||||    
T  17735879 cagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttcctta 17735960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 17708125 - 17708306
Alignment:
Q  124 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 223  Q
    ||||| ||||||||||||||||| || ||||| |  ||||| | |||||||||  ||||| |||| || |||||||||||| |||||||  |||| |  |    
T  17708125 ctcatatttgctaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagt 17708224  T
Q  224 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttcctta 305  Q
    || | ||||||||||| ||||| |||| | |   |||||||||||||  ||||||||||||||| || ||||||||||||||    
T  17708225 cagtaaaggttccctttatgaccagcaagaatgatcagtttatcagttcttttgatggttttaaagttcttggtcttcctta 17708306  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 17717955 - 17718130
Alignment:
Q  130 tttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagctcattca 229  Q
    ||||| ||||||||||| || ||||| |  ||| | ||||| |||||  ||||| |||| || |||||||||||| |||||||  |||| |  ||| | |    
T  17717955 tttgcaaatgcactatatttcaaaggagtgtggaaacaaccctttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaa 17718054  T
Q  230 aggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttcctta 305  Q
    |||||||||| ||||| |||| | |   |||||||||||||  ||||||||||||||| || ||||||||||||||    
T  17718055 aggttccctttatgaccagcaagaatgatcagtttatcagttcttttgatggttttaaagttcttggtcttcctta 17718130  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 303
Target Start/End: Original strand, 17744966 - 17745139
Alignment:
Q  130 tttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagctcattca 229  Q
    |||||||||||||||||||| ||||| | |||| | |||  ||||||  ||||| |||| || |||||||||||| |||||||  | || |  ||| | |    
T  17744966 tttgctaatgcactatacttcaaaggagtatggaaacaaaagtttgatacttcaaaaacgaaggactatgattttgaccttcttaacggcaagtcagtaa 17745065  T
Q  230 aggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttcct 303  Q
    |||||||||| ||||| |||| | |   |||||||||||||   || ||||||||||| |||||||||||||||    
T  17745066 aggttccctttatgaccagcaagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttcct 17745139  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 16722002 - 16722184
Alignment:
Q  124 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 223  Q
    ||||| ||||||||||||||||| || ||||| |  ||| | |||| ||| ||  || || |||| || |||||||||||| |||||||  |||| |  |    
T  16722002 ctcatctttgctaatgcactatatttcaaaggagtgtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaatggcaagt 16722101  T
Q  224 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttccttat 306  Q
    || | |||||||| || ||||| |||| | |   |||||||||||||   || ||||||||||| ||||||||||||||||||    
T  16722102 cagtaaaggttccatttatgaccagcaagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttccttat 16722184  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 17699016 - 17699198
Alignment:
Q  124 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 223  Q
    ||||| ||||||||||||||||| || ||||| |  ||| | |||| ||| ||  || || |||| || |||||||||||| |||||||  |||| |  |    
T  17699016 ctcatctttgctaatgcactatatttcaaaggagtgtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaatggcaagt 17699115  T
Q  224 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtccttggtcttccttat 306  Q
    || | |||||||| || ||||| |||| | |   |||||||||||||   || ||||||||||| ||||||||||||||||||    
T  17699116 cagtaaaggttccatttatgaccagcaagaatgatcagtttatcagttcgttagatggttttaaagtccttggtcttccttat 17699198  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 15555862 - 15555976
Alignment:
Q  122 gactcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtag 221  Q
    ||||||| ||||| |||||||| |||||||||||   |||| ||||   |||||| |||||  |||| |||||||||||||||||||||||  |||||||    
T  15555862 gactcatctttgcaaatgcactgtactttaaaggactatggtatcagaagtttgatgcttccaaaacgaaagactatgattttcaccttctcaatggtag 15555961  T
Q  222 ctcattcaaggttcc 236  Q
    |||| ||||||||||    
T  15555962 ctcactcaaggttcc 15555976  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 35162361 - 35162473
Alignment:
Q  194 actatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggttttaaggtcct 293  Q
    |||||||||||||||||||  |||| |||||| ||||||||||||||||||||| ||       ||||||||| || | ||||||||||||||| || ||    
T  35162361 actatgattttcaccttctgaatggaagctcagtcaaggttcccttcatgactaccaaccttgatcagtttattagagcttttgatggttttaaagttct 35162460  T
Q  294 tggtcttccttat 306  Q
    | |||||||||||    
T  35162461 tcgtcttccttat 35162473  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 35155333 - 35155397
Alignment:
Q  187 acaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcag 251  Q
    |||||| | |||||||||||||||||  |||| |||||| ||||||||||||||||||| |||||    
T  35155333 acaaaaaaatatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcag 35155397  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 21464400 - 21464281
Alignment:
Q  187 acaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatggtttta 286  Q
    |||| |||||| ||||||||| ||||  |||||||| |  |||||||||| |||||||| |||   | ||  |||| |||||||||| ||||||||||||    
T  21464400 acaagagactacgattttcacattcttaatggtagcccggtcaaggttcctttcatgaccagctatgtgatgcagtatatcagtgttcttgatggtttta 21464301  T
Q  287 aggtccttggtcttccttat 306  Q
    | |||||| |||||||||||    
T  21464300 aagtccttcgtcttccttat 21464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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