View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18601_low_1 (Length: 704)

Name: NF18601_low_1
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18601_low_1
NF18601_low_1
[»] chr3 (6 HSPs)
chr3 (15-704)||(51295323-51296012)
chr3 (291-343)||(25252042-25252094)
chr3 (291-326)||(24478539-24478574)
chr3 (280-318)||(2990978-2991016)
chr3 (294-343)||(29208267-29208316)
chr3 (292-329)||(43307635-43307672)
[»] chr6 (7 HSPs)
chr6 (291-358)||(21869850-21869917)
chr6 (263-358)||(2766853-2766948)
chr6 (291-356)||(9163745-9163810)
chr6 (299-343)||(770344-770388)
chr6 (291-343)||(2732938-2732990)
chr6 (291-329)||(2457232-2457270)
chr6 (291-327)||(33735442-33735478)
[»] chr4 (9 HSPs)
chr4 (292-358)||(415132-415198)
chr4 (263-329)||(34581595-34581661)
chr4 (511-562)||(46011954-46012005)
chr4 (291-358)||(4145260-4145327)
chr4 (291-358)||(25402827-25402894)
chr4 (291-353)||(12909632-12909694)
chr4 (281-329)||(7301185-7301233)
chr4 (511-563)||(34558029-34558081)
chr4 (292-336)||(35522076-35522120)
[»] chr1 (8 HSPs)
chr1 (263-343)||(6025949-6026029)
chr1 (290-358)||(12132090-12132158)
chr1 (291-341)||(28059234-28059284)
chr1 (514-568)||(40475-40529)
chr1 (291-353)||(15955885-15955947)
chr1 (525-563)||(45580762-45580800)
chr1 (291-363)||(37129080-37129153)
chr1 (291-343)||(15956880-15956932)
[»] chr7 (6 HSPs)
chr7 (291-358)||(38622886-38622953)
chr7 (291-363)||(2219532-2219604)
chr7 (291-358)||(25268805-25268872)
chr7 (283-328)||(1109348-1109393)
chr7 (291-356)||(39417751-39417816)
chr7 (292-360)||(25314038-25314106)
[»] chr5 (6 HSPs)
chr5 (292-358)||(34156643-34156709)
chr5 (291-321)||(35713285-35713315)
chr5 (281-334)||(4787923-4787976)
chr5 (291-343)||(21047074-21047126)
chr5 (303-351)||(39259164-39259212)
chr5 (263-319)||(42217619-42217675)
[»] chr8 (5 HSPs)
chr8 (513-560)||(10428752-10428799)
chr8 (291-358)||(34862898-34862965)
chr8 (291-337)||(31809777-31809823)
chr8 (291-360)||(43876538-43876607)
chr8 (291-343)||(14928236-14928288)
[»] chr2 (2 HSPs)
chr2 (282-343)||(41631882-41631943)
chr2 (292-336)||(39597586-39597630)


Alignment Details
Target: chr3 (Bit Score: 670; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 15 - 704
Target Start/End: Complemental strand, 51296012 - 51295323
Alignment:
Q  15 cttatcacactcttgctcttgcaggttcactaacacttcatacctttctaattttctctttcaattttacaactgcattacctcatcaaggtgtaatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51296012 cttatcacactcttgctcttgcaggttcactaacacttcacacctttctaattttctctttcaattttacaactgcattacctcatcaaggtgtaatttt 51295913  T
Q  115 tattttcattgttattcttgttgcatattgataaggctaatgccaattcataaattgtcacatatagttggaaatttgttatatttgtgttgccaaacgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295912 tattttcattgttattcttgttgcatattgataaggctaatgccaattcataaattgtcacatatagttggaaatttgttatatttgtgttgccaaacgc 51295813  T
Q  215 ggattgcgcaaaatagtaatttgttcaaattatgatgtgcaatagtactgctatagagcaactatggccactactcgacaacattttgtactaaatagcg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295812 ggattgcgcaaaatagtaatttgttcaaattatgatgtgcaatagtactgctatagagcaactatggccactactcgacaacattttgtactaaatagcg 51295713  T
Q  315 tatcacgaaacaataacgatttgatcaaactctgctacgctataacgctatggttccgctacacccgatatttaataacattgtgttagatatatttgga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295712 tatcacgaaacaataacgatttgatcaaactctgctacgctataacgctatggttccgctacacccgatatttaataacattgtgttagatatatttgga 51295613  T
Q  415 gtttgataatgatagttaaaagttggttagtatttgttgcaactaagtttagatttgttagtttaagttacgatcactctataaagtatgtcctactcct 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  51295612 gtttgataatgatagttaaaagttggttagtatttgttgcaactaagttaagatttgttggtttaagttacgatcactatataaagtatgtcctactcct 51295513  T
Q  515 acactgattataatcaacttttctcattttatcaatttcaaataatcaaactttgttgggctctatcatgcttctcaacagacaaagaatactagaaaca 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295512 acactgattataatcaacttttctcattttatcaatttcaaataatcaaactttgttgggctctatcatgcttctcaacagacaaagaatactagaaaca 51295413  T
Q  615 tgttctttgttatcgcttaaatctcatgagtcaatgtgacatttgaccttatgatagagcccatatgctttaatattaacataacctttt 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51295412 tgttctttgttatcgcttaaatctcatgagtcaatgtgacatttgaccttatgatagagcccatatgctttaatattaacataacatttt 51295323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 25252094 - 25252042
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  25252094 gacaacattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaa 25252042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 326
Target Start/End: Complemental strand, 24478574 - 24478539
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaaca 326  Q
    |||||||||||||||||||||||| |||||||||||    
T  24478574 gacaacattttgtactaaatagcgaatcacgaaaca 24478539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 2990978 - 2991016
Alignment:
Q  280 ggccactactcgacaacattttgtactaaatagcgtatc 318  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  2990978 ggccactatttgacaacattttgtactaaatagcgtatc 2991016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 29208316 - 29208267
Alignment:
Q  294 aacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    |||||||||||||||| ||||||||  | ||||||||||||||| |||||    
T  29208316 aacattttgtactaaacagcgtatcgtggaacaataacgatttgttcaaa 29208267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 43307635 - 43307672
Alignment:
Q  292 acaacattttgtactaaatagcgtatcacgaaacaata 329  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  43307635 acaacattttgtactaaacagcgtatcacaaaacaata 43307672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 21869917 - 21869850
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||| || || ||||||||||||||    
T  21869917 gacaacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattctgctacgctata 21869850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 2766948 - 2766853
Alignment:
Q  263 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    |||||||| ||  ||||||| |||| | ||||| ||||| ||||||||| ||||||||  |||||||  |||||| |||||| |||||||||||||    
T  2766948 tgctatagtgcttctatggctactatttgacaatattttatactaaataacgtatcacataacaatagagatttgttcaaaccctgctacgctata 2766853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 9163810 - 9163745
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgcta 356  Q
    ||||||||||||||||||||||||||| ||| |||||||  |||||| ||||| | | ||||||||    
T  9163810 gacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatttttctacgcta 9163745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 770388 - 770344
Alignment:
Q  299 tttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||    
T  770388 tttgtactaaatagcgtatcacggaacaataccgatttgttcaaa 770344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 2732990 - 2732938
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    ||||||||||||||||||||||| |||| | |||||||| ||||||| |||||    
T  2732990 gacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaa 2732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 2457270 - 2457232
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaata 329  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  2457270 gacaacattttgtactaaatagcatatcacaaaacaata 2457232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 33735442 - 33735478
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaa 327  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  33735442 gacaacattttgtactaaatagcatatcacggaacaa 33735478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 415198 - 415132
Alignment:
Q  292 acaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||| ||||| ||||||| ||||||    
T  415198 acaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctata 415132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 34581661 - 34581595
Alignment:
Q  263 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatcacgaaacaata 329  Q
    |||||||| || ||||| ||| ||| | ||||||||||||||||||||||||||||||| |||||||    
T  34581661 tgctatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaata 34581595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 46012005 - 46011954
Alignment:
Q  511 tcctacactgattataatcaacttttctcattttatcaatttcaaataatca 562  Q
    ||||| ||| ||| |||||||||||||| |||||||||||||||||||||||    
T  46012005 tcctatactcattgtaatcaacttttcttattttatcaatttcaaataatca 46011954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 4145260 - 4145327
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    |||||||||||||||| ||||||||||   | ||||||||| ||||| ||||| ||||||| ||||||    
T  4145260 gacaacattttgtactgaatagcgtatggtggaacaataacaatttgttcaaattctgctatgctata 4145327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 25402894 - 25402827
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    |||||||||||||| || ||| |||||||  |||||||| |||| || ||||| ||||||||||||||    
T  25402894 gacaacattttgtattacatatcgtatcattaaacaatagcgatctgttcaaattctgctacgctata 25402827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 12909632 - 12909694
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacg 353  Q
    ||||||| ||| ||||||||||||| ||||  ||||||| ||||| | |||||||||||||||    
T  12909632 gacaacaatttatactaaatagcgtgtcacataacaatagcgattggttcaaactctgctacg 12909694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 7301233 - 7301185
Alignment:
Q  281 gccactactcgacaacattttgtactaaatagcgtatcacgaaacaata 329  Q
    ||||||| |||||||||||||||| |  ||||| |||||||||||||||    
T  7301233 gccactagtcgacaacattttgtattgtatagcatatcacgaaacaata 7301185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 34558029 - 34558081
Alignment:
Q  511 tcctacactgattataatcaacttttctcattttatcaatttcaaataatcaa 563  Q
    ||||| ||| |||||  |||| |||||||||| ||||||||||||||||||||    
T  34558029 tcctatacttattatgctcaatttttctcattctatcaatttcaaataatcaa 34558081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 35522120 - 35522076
Alignment:
Q  292 acaacattttgtactaaatagcgtatcacgaaacaataacgattt 336  Q
    |||| |||||| ||||||||| |||||||||||||||||| ||||    
T  35522120 acaatattttgcactaaatagtgtatcacgaaacaataacaattt 35522076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 6025949 - 6026029
Alignment:
Q  263 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    |||||||| ||  |||| ||||||| | ||||||||||||||||||||||| |||| || ||||||||| ||||| |||||    
T  6025949 tgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaa 6026029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 12132090 - 12132158
Alignment:
Q  290 cgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    |||||||| |||||||||||||||||||||  ||||||||| || ||||||||| || ||| |||||||    
T  12132090 cgacaacactttgtactaaatagcgtatcataaaacaataatgacttgatcaaattccgcttcgctata 12132158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 28059284 - 28059234
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatca 341  Q
    |||||||||||||||| |||||||||||||  ||||||| |||||||||||    
T  28059284 gacaacattttgtactcaatagcgtatcacagaacaatatcgatttgatca 28059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 40475 - 40529
Alignment:
Q  514 tacactgattataatcaacttttctcattttatcaatttcaaataatcaaacttt 568  Q
    |||||| ||| |||||||||||||||||| |||| ||| ||||||||||| ||||    
T  40475 tacactcattgtaatcaacttttctcattctatctattccaaataatcaatcttt 40529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 15955947 - 15955885
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacg 353  Q
    ||||||||||||| |||||||| |||||||  ||||| ||||||||| ||||| ||| |||||    
T  15955947 gacaacattttgtcctaaatagtgtatcacataacaagaacgatttgttcaaattctactacg 15955885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 45580800 - 45580762
Alignment:
Q  525 taatcaacttttctcattttatcaatttcaaataatcaa 563  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  45580800 taatcaacttttctcattctatcgatttcaaataatcaa 45580762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 37129153 - 37129080
Alignment:
Q  291 gacaacattttgtactaaatagcgtat-cacgaaacaataacgatttgatcaaactctgctacgctataacgct 363  Q
    ||||||||||||||||| ||||| ||  |||| |||||||  |||||| ||||| |||||||||||||| ||||    
T  37129153 gacaacattttgtactatatagcataaacacggaacaatagtgatttgttcaaattctgctacgctatagcgct 37129080  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 15956932 - 15956880
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    ||||||| |||||||||||||||||||  || ||||||||| ||||| |||||    
T  15956932 gacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaa 15956880  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 38622886 - 38622953
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    ||||||||||||| |||||||| |||||| | ||||||| ||||||  ||||| ||||||||||||||    
T  38622886 gacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctata 38622953  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 2219532 - 2219604
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataacgct 363  Q
    ||||| ||||||||||||||||| |||||   |||||||||||| || ||||| ||| |||| ||||||||||    
T  2219532 gacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattctactacactataacgct 2219604  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 25268872 - 25268805
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    ||||| ||||| |||||||||| ||||  |  ||||||||||||||| ||||| ||||||||||||||    
T  25268872 gacaatattttatactaaatagtgtatagcagaacaataacgatttgttcaaattctgctacgctata 25268805  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 1109348 - 1109393
Alignment:
Q  283 cactactcgacaacattttgtactaaatagcgtatcacgaaacaat 328  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||||    
T  1109348 cactacttgacaacattttgtactaaatagtgtatcgcggaacaat 1109393  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 39417816 - 39417751
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgcta 356  Q
    ||||||||||||||||| ||||| |||| || |||||||  |||||| ||||| |||| |||||||    
T  39417816 gacaacattttgtactatatagcatatcgcggaacaatagtgatttgttcaaattctgttacgcta 39417751  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 25314038 - 25314106
Alignment:
Q  292 acaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataac 360  Q
    |||||| ||||||| |||||| |||||||  ||||||||||||||| ||||| ||  ||| ||||||||    
T  25314038 acaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctataac 25314106  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 34156709 - 34156643
Alignment:
Q  292 acaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    ||||||||||| |||||||||||||||||| | ||| | ||||| | ||||| ||||||||||||||    
T  34156709 acaacattttgcactaaatagcgtatcacggagcaaaagcgattagttcaaattctgctacgctata 34156643  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 35713315 - 35713285
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacg 321  Q
    |||||||||||||||||||||||||||||||    
T  35713315 gacaacattttgtactaaatagcgtatcacg 35713285  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 4787976 - 4787923
Alignment:
Q  281 gccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgat 334  Q
    ||||||| | |||||||||||||||||||||| ||||||  | |||||||||||    
T  4787976 gccactatttgacaacattttgtactaaatagtgtatcattagacaataacgat 4787923  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 21047074 - 21047126
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    ||||||||||| ||||||||||| ||||||| |||||||  ||||| ||||||    
T  21047074 gacaacattttttactaaatagcatatcacggaacaatagtgattttatcaaa 21047126  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 39259164 - 39259212
Alignment:
Q  303 tactaaatagcgtatcacgaaacaataacgatttgatcaaactctgcta 351  Q
    ||||||| ||| |||| || ||||||||||||||||||||| |||||||    
T  39259164 tactaaacagcttatcgcggaacaataacgatttgatcaaattctgcta 39259212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 42217619 - 42217675
Alignment:
Q  263 tgctatagagcaactatggccactactcgacaacattttgtactaaatagcgtatca 319  Q
    |||||||| |||||||| ||||||| |  |||| |||||||||||| ||||||||||    
T  42217619 tgctatagcgcaactatagccactatttcacaatattttgtactaagtagcgtatca 42217675  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 560
Target Start/End: Original strand, 10428752 - 10428799
Alignment:
Q  513 ctacactgattataatcaacttttctcattttatcaatttcaaataat 560  Q
    ||||||| ||| ||||||| |||| |||||||||||||||||||||||    
T  10428752 ctacactcattgtaatcaagttttttcattttatcaatttcaaataat 10428799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 34862965 - 34862898
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctata 358  Q
    ||||||||||||||||| ||||||||||  | | ||||| || ||||  |||||||||||||||||||    
T  34862965 gacaacattttgtactatatagcgtatcgtggagcaatagcggtttgtccaaactctgctacgctata 34862898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 31809823 - 31809777
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttg 337  Q
    ||||||||||||||||||||||||||| | ||||||| |||| ||||    
T  31809823 gacaacattttgtactaaatagcgtatgaagaaacaacaacggtttg 31809777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 43876607 - 43876538
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgctacgctataac 360  Q
    ||||||| | |||||||||||||||||||  |||||||| ||| | | ||||| || |||||||||||||    
T  43876607 gacaacactctgtactaaatagcgtatcataaaacaatatcgactaggtcaaaatccgctacgctataac 43876538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 14928236 - 14928288
Alignment:
Q  291 gacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    ||||||| |||||||| |||||||||||| | |||||||| |||||| |||||    
T  14928236 gacaacactttgtacttaatagcgtatcatgtaacaataaagatttgttcaaa 14928288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 41631882 - 41631943
Alignment:
Q  282 ccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 343  Q
    |||||| ||||||||| || |||||||||||| |||||| |||||||| | ||||| |||||    
T  41631882 ccactattcgacaacacttcgtactaaatagcatatcacaaaacaatagcaatttgttcaaa 41631943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 39597630 - 39597586
Alignment:
Q  292 acaacattttgtactaaatagcgtatcacgaaacaataacgattt 336  Q
    |||| |||||||||||||||||||||| || ||||||| ||||||    
T  39597630 acaatattttgtactaaatagcgtatcgcggaacaatagcgattt 39597586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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