View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_10 (Length: 304)
Name: NF18601_low_10
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_10 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 47920688 - 47920977
Alignment:
| Q |
15 |
aatatgaactccgatagatgaacaaacttagcattaatcatgtatataactaagnnnnnnnctagaacaatcaagtttctaactaaccgtccagcctgct |
114 |
Q |
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| T |
47920688 |
aatatgaactccgatagatgaacaaacttagcattaatcatgtatataactaagaaaaaaactagaacaatcaagtgtctaactaaccgtccagcctgct |
47920787 |
T |
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| Q |
115 |
tcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaacttttggattccacacattaa |
214 |
Q |
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| T |
47920788 |
tcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaacttttggattccacacattaa |
47920887 |
T |
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| Q |
215 |
tattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacacccccatatatccatttatatataa |
304 |
Q |
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| T |
47920888 |
tattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacacccccatatatccatttatatataa |
47920977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 96 - 288
Target Start/End: Original strand, 47910163 - 47910352
Alignment:
| Q |
96 |
actaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaact |
195 |
Q |
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| T |
47910163 |
actaaccgtccatcctgcttcaacactttctaaattatct---ccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacc |
47910259 |
T |
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| Q |
196 |
tttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacacccccatat |
288 |
Q |
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| T |
47910260 |
tttggattccatacgttaatattcgcttgggcgcctataaaattgaatgcgtatgccataagtaatgcatcctgcacaatcacaccaccatat |
47910352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 281
Target Start/End: Original strand, 47941505 - 47941687
Alignment:
| Q |
96 |
actaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaact |
195 |
Q |
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| T |
47941505 |
actaaccgcccaacctgcttcgatggtttcaa---tttcaagaccattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaacc |
47941601 |
T |
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| Q |
196 |
tttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacacc |
281 |
Q |
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| T |
47941602 |
tttggattccatatattaatatttcctagggcgcctataaaattgtatccaaatgtcgcaagatgtgcatcctgcatgatcacacc |
47941687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 281
Target Start/End: Original strand, 47929103 - 47929286
Alignment:
| Q |
95 |
aactaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaac |
194 |
Q |
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| T |
47929103 |
aactaaccgtccagcctgcttcaatgctttcgaaattattt---ccattatcagccttaagccacatttgagcggtagtgaaatcttctggtttgtcaac |
47929199 |
T |
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| Q |
195 |
ttttggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatcacacc |
281 |
Q |
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| T |
47929200 |
ctttggattccaaacgttgatatttgcttgtgcgcctatataattatatccgtatgtcacaagatgagcatcctgcatgatcacacc |
47929286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 277
Target Start/End: Original strand, 47947427 - 47947602
Alignment:
| Q |
99 |
aaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggtttttcaactttt |
198 |
Q |
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| T |
47947427 |
aaccatccagccagcttcaacgcttgcaaaattttca---ccattgttagccttaagccacatttgagccgtagtgaaatcttctggttgttcaacattt |
47947523 |
T |
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| Q |
199 |
ggattccacacattaatattcgcttgtgcccctataaattggaatgcatatgccacaagaagtgcatcctgcacgatca |
277 |
Q |
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| T |
47947524 |
ggattccatacgttgatgtttgcttgtgcgcctataaaattgaatcctaatgtcgcaagatgtgcatcctgcatgatca |
47947602 |
T |
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