View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_11 (Length: 241)
Name: NF18601_low_11
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 10031388 - 10031158
Alignment:
| Q |
8 |
gtccaaaaagaatttcctttctaatataaaaaattgttgtctaagatttgaagtcttaatatttgtcacacttacaatcaatcttatcatcaattggtgc |
107 |
Q |
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| T |
10031388 |
gtccaaaaagaatttcctttctaatataaaaagttgttgtctaagatttgaagtcttaatatttgtcacacttacaatcaatcttatcatcaattggtgc |
10031289 |
T |
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| Q |
108 |
aattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatgggaatttgtgtcaaacatgtcaaacacctacataatttgaaaa |
207 |
Q |
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| T |
10031288 |
aattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatgggaatttgtgtcaaacatgtcaaacacctacataatttgaaaa |
10031189 |
T |
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| Q |
208 |
gaataacaagcaaatatttaccagtgttcat |
238 |
Q |
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| T |
10031188 |
gaataacaagcaaatatttaccagtgttcat |
10031158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 10053301 - 10053071
Alignment:
| Q |
8 |
gtccaaaaagaatttcctttctaatataaaaaattgttgtctaagatttgaagtcttaatatttgtcacacttacaatcaatcttatcatcaattggtgc |
107 |
Q |
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| T |
10053301 |
gtccaaaaagaatttcctttctaatataaaaagttgttgtctaagatttgaagtcttaatatttgtcacacttacaatcaatcttatcatcaattggtgc |
10053202 |
T |
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| Q |
108 |
aattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatgggaatttgtgtcaaacatgtcaaacacctacataatttgaaaa |
207 |
Q |
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| T |
10053201 |
aattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatgggaatttgtgtcaaacatgtcaaacacctacataatttgaaaa |
10053102 |
T |
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| Q |
208 |
gaataacaagcaaatatttaccagtgttcat |
238 |
Q |
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| T |
10053101 |
gaataacaagcaaatatttaccagtgttcat |
10053071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 10074164 - 10073949
Alignment:
| Q |
8 |
gtccaaaaagaatttcctttctaatataaaaaattgttgtcta--agat--ttgaagtctt------aatatttgtcacacttacaatcaatcttatcat |
97 |
Q |
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| T |
10074164 |
gtccaaaaagcctttcctttctaataaaaaaaattgttgactagaagatgtttaaagtcttgataaaaatatttgtcacacttacattcaatcttatcat |
10074065 |
T |
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| Q |
98 |
caattggtgcaattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatgggaatttgtgtcaaacatgtcaaacacctacat |
197 |
Q |
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| T |
10074064 |
ccactggtgcaattggatggaaaatagacatagcagatgcaaactctttgaaattgagtactccatgggaatttgtgtcaaacatgtcaaacacctacat |
10073965 |
T |
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| Q |
198 |
aatttgaaaagaataa |
213 |
Q |
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| T |
10073964 |
aatttgaaaagaataa |
10073949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 10063486 - 10063313
Alignment:
| Q |
65 |
aatatttgtcacacttacaatcaatcttatcatcaattggtgcaattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatg |
164 |
Q |
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| T |
10063486 |
aatatttgtaacacttacattcaatcttatcatcaattggtgcaattggatggaaaacagacagagcagatgcaaactctttgaaatcgagtgctccatg |
10063387 |
T |
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| Q |
165 |
ggaatttgtgtcaaacatgtcaaacacctacataatttgaaaagaataacaagcaaatatttaccagtgttcat |
238 |
Q |
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| T |
10063386 |
tgaatttgtgtcaaacatgtcaaacacctgcataatttgaaaataataacaaacaaatttttacctatgttcat |
10063313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 56200575 - 56200445
Alignment:
| Q |
69 |
tttgtcacacttacaatcaatcttatcatcaattggtgcaattggatggaaaatagacagagcagatgcaaactctttgaaatcgagtactccatgggaa |
168 |
Q |
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| T |
56200575 |
tttgtcattcttacactgaatcttctcatcaattggtgcgttgggatgaaaaacagaaagagcacgggcaaactcttcaaaatcaagtatcccattgtgc |
56200476 |
T |
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| Q |
169 |
tttgtgtcaaacatgtcaaacacctacataa |
199 |
Q |
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| T |
56200475 |
tttgtatcaaacaagtcaaacacctacataa |
56200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 12534065 - 12534021
Alignment:
| Q |
169 |
tttgtgtcaaacatgtcaaacacctacataatttgaaaagaataa |
213 |
Q |
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| T |
12534065 |
tttgtgtcaaactggtcaaacaccaacacaatttgaaaagaataa |
12534021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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