View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_12 (Length: 234)
Name: NF18601_low_12
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 39877707 - 39877498
Alignment:
| Q |
11 |
gatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
110 |
Q |
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| T |
39877707 |
gatgaaggacgcttcaattttaaatggctcacatcattcgataaaaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
39877608 |
T |
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| Q |
111 |
aatatgttcctttatcagcaaggttgtctaagaagggataccatcattaacaaactccagattgtcaggcctttgttttttgggatttggttcatccttt |
210 |
Q |
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| T |
39877607 |
atgatgttcctttatcagcaaggttgtctaagaagggataccatcattaacaaactccagattgtcaggcctttgttttttgggatttggttcatccttt |
39877508 |
T |
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| Q |
211 |
agcctatgtg |
220 |
Q |
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|||||||||| |
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| T |
39877507 |
agcctatgtg |
39877498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 39422952 - 39422853
Alignment:
| Q |
11 |
gatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
110 |
Q |
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| T |
39422952 |
gatgaaggacacttcaattttaaatggcacacatcattcgataaaaaaacatcgcattcagattcttgtaaagactatgaatctgaagatgatgatgatg |
39422853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 39488479 - 39488380
Alignment:
| Q |
11 |
gatgaaggacgcttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
110 |
Q |
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| T |
39488479 |
gatgaagaacacttaaattttaaatggctcgcatcatttgataaaaaaacatcgcattcagcttctcgtgaagactatgaatctgaagatgatgatgatg |
39488380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 39416788 - 39416668
Alignment:
| Q |
22 |
cttcaattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcct |
121 |
Q |
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| T |
39416788 |
cttcaattttaaatggcttgcatcattcgataaaaaaacatcgcattcagcttcacgtgaagactttgaatctgatgatgatgatgatg---atgttcct |
39416692 |
T |
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| Q |
122 |
ttatcagcaaggttgtctaagaag |
145 |
Q |
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| T |
39416691 |
ttgtcagcaaggtttgctaagaag |
39416668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 39151526 - 39151598
Alignment:
| Q |
60 |
catcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggtt |
135 |
Q |
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| T |
39151526 |
catctcattcagcttctcgcgaagactttgaatctgaagatgaagatgatg---atgttcctttgtcagcaaggtt |
39151598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 39474668 - 39474588
Alignment:
| Q |
26 |
aattttaaatggctcacatcattcgatnnnnnnncatcgcattcagattctcgtgaagactatgaatctgaagatgatgat |
106 |
Q |
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| T |
39474668 |
aattttaaatggctaacatcattcgataaaagtacattgcattcaccttttcgtcaagactttgaatctgaagatgatgat |
39474588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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