View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_13 (Length: 217)
Name: NF18601_low_13
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_13 |
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| [»] chr3 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 47921039 - 47921247
Alignment:
| Q |
9 |
atgatatgtaccgagcgatttttcagatcaactacaccatcattggcgttgagattggagaaattaaggtttgtggggtttcttgaattcacaaatactt |
108 |
Q |
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| T |
47921039 |
atgatatgtaccgagcgatttttcagatcaactacaccatcattggcgtttagattggagaaattaaggtttgtggggtttattgaattcacaaatactt |
47921138 |
T |
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| Q |
109 |
cagaaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctttccgaattcttcgaatagggacagtttcttctggacaacttccact |
208 |
Q |
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| T |
47921139 |
caggaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctttccgaattcttcgaatagggacagtttcttctggacaacttccact |
47921238 |
T |
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| Q |
209 |
tttctgcca |
217 |
Q |
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| T |
47921239 |
tttctgcca |
47921247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 47929481 - 47929624
Alignment:
| Q |
69 |
aaattaaggtttgtggggtttcttgaattcacaaatacttcagaaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctttccgaa |
168 |
Q |
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| T |
47929481 |
aaatttaggtttgtgttgtatgttgtattcacaaatagttctaaaggtttttgtccgaagcggtcaagtgaaacagctctgagcaagtcctcttttcgaa |
47929580 |
T |
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| Q |
169 |
ttcttcgaatagggacagtttcttctggacaacttccacttttc |
212 |
Q |
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| T |
47929581 |
ttcttcgtataggaacagtttcttctggacaacttccacttttc |
47929624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 47910523 - 47910667
Alignment:
| Q |
68 |
gaaattaaggtttgtggggtttcttgaattcacaaatacttcagaaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctttccga |
167 |
Q |
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| T |
47910523 |
gaaattaaggtttgtgttatatgttgaattcacaaatagttccaaaggtttttgtccgaagcggtcaagtgaaacagctctcagcaagtcctcttttcta |
47910622 |
T |
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| Q |
168 |
attcttcgaatagggacagtttcttctggacaacttccacttttc |
212 |
Q |
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| T |
47910623 |
attcttcttattggaacagtttcttctggacaacttccacttttc |
47910667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 47947836 - 47947940
Alignment:
| Q |
113 |
aggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctttccgaattcttcgaatagggacagtttcttctggacaacttccacttttc |
212 |
Q |
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| T |
47947836 |
aggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcctcctttcgaattctacgaataggtacagtttcttttggacaacttccacttttc |
47947935 |
T |
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| Q |
213 |
tgcca |
217 |
Q |
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| T |
47947936 |
tgcca |
47947940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 47941841 - 47941995
Alignment:
| Q |
58 |
tgagattggagaaattaaggtttgtggggtttcttgaattcacaaatacttcagaaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtc |
157 |
Q |
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| T |
47941841 |
tgaggttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctcaacaagtc |
47941940 |
T |
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| Q |
158 |
ttctttccgaattcttcgaatagggacagtttcttctggacaacttccacttttc |
212 |
Q |
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| T |
47941941 |
atccttttgaattctacgaataggtacggttccttttggacaacttccgcttttc |
47941995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 3859226 - 3859175
Alignment:
| Q |
166 |
gaattcttcgaatagggacagtttcttctggacaacttccacttttctgcca |
217 |
Q |
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| T |
3859226 |
gaattcttcgaatggggacagttccttttggacaccttccacttttatgcca |
3859175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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