View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_2 (Length: 561)
Name: NF18601_low_2
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Complemental strand, 13283241 - 13282712
Alignment:
| Q |
16 |
ataaacaatataattaatgtccataactccatattatacttcaaaatatataaagatgcatacagaatgaagtaatgtaaaacaagaattgagtaactca |
115 |
Q |
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| T |
13283241 |
ataaacaatataattaatgtccataactccatattatacttcaaaatatataaagatgcatacagaatcaagtaatgtaaaacaagaattgagtaactca |
13283142 |
T |
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| Q |
116 |
agtgatacgagctcggttgaaggatgaaacatcgagtataaaactctagtgaagaataaaatactgacataacgactaatatactaacatttgtatctat |
215 |
Q |
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| T |
13283141 |
agtgatacgagctcggttgaaggatgaaacatcgagtataaaactctagtgaagaacaaaatagtgacataacgactaatatactaacatttgtatctat |
13283042 |
T |
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| Q |
216 |
aaaaatattaatgatgtatatcgcacctaacatcttggcacacatgggaaaggcgtctaggttcatcatcaagatgacaaccctcatcaaaattctgtga |
315 |
Q |
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| T |
13283041 |
aaaaatattaatgatgtatatcgcacctaacatcttggcacacatgggaaaggcgtcttggttcatcatcaagatgacaaccctcatcaaaattctgtga |
13282942 |
T |
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| Q |
316 |
gtagctaataggatcatattgaaaagaaatttgcttgtgcccacccaagattcttctctccctcaagaattttctaagtaggttcctccacctccacttt |
415 |
Q |
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| T |
13282941 |
gtagctaataggatcatattgaaaagaaatttgcttgtgcccacccaagattcttctctccctcaagaattttctaagtaggttcctccacctccacttt |
13282842 |
T |
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| Q |
416 |
ctctttataggactataatggattttagagtattggaactcatttgggacagggaaacaaggtggagacatgatacaattggagatgtaagagggtctaa |
515 |
Q |
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| T |
13282841 |
ctctttataggactataatggattttagagtattggaactcatttgggacagggaaacaaggtggagacatgatacaattggagatgtaagagggtctaa |
13282742 |
T |
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| Q |
516 |
tttgcacttttttgattgtgagatcttgtt |
545 |
Q |
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| T |
13282741 |
tttgcacttttttgattgtgagatcttgtt |
13282712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 26533843 - 26533892
Alignment:
| Q |
173 |
aaaatactgacataacgactaatatactaacatttgtatctataaaaata |
222 |
Q |
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| T |
26533843 |
aaaatactaacataacaactaatatactaacatttggatataaaaaaata |
26533892 |
T |
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