View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_3 (Length: 505)
Name: NF18601_low_3
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 46555044 - 46554648
Alignment:
| Q |
1 |
cagaagaataatgaatatccttagcaaatcaatcgcaaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaa |
100 |
Q |
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| T |
46555044 |
cagaagaataatgaatatccttagcaaatcaatcgcaaacctaaccaagagttctatgaacatcg------atctgttatccaatccagaattcaaagaa |
46554951 |
T |
|
| Q |
101 |
cgaaacgtagtgctttcgcccttgtcactccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcg |
200 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554950 |
cggaacgtagtgttttcgcccttgtcactccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcg |
46554851 |
T |
|
| Q |
201 |
gatcagaatccgtccaacatcttaactccttgtcctctcacctcgtttcccatgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgc |
300 |
Q |
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| T |
46554850 |
gatcagaatccatccaccatcttaactccttgtcctctcacctcgtttcccatgtgcttaaagacgc-----------gtggtctttccttgtcttctgc |
46554762 |
T |
|
| Q |
301 |
atacgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46554761 |
atacgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctattaattataaggccactctccaatcacatgatttcatt |
46554662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 409
Target Start/End: Original strand, 46531192 - 46531574
Alignment:
| Q |
27 |
aatcaatcgcaaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaacga-aacgtagtgctttcgcccttgt |
125 |
Q |
| |
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|||||||||| || ||||||||| | |||||||||||||||||||||| |||| || |||||||||| ||| | || || |||||||| || |||| |
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| T |
46531192 |
aatcaatcgctaatttaaccaagaatgctatgaacatcaccaaacatttggtatcaaaaacagaattcaa-gaagaagaatgtcgtgctttcaccgttgt |
46531290 |
T |
|
| Q |
126 |
cactccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccgtccaacatcttaa |
225 |
Q |
| |
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||||||||||| |||||| || || |||| |||||||||||||| || ||| ||||||||||||||||||| || ||| ||||| | | ||||| || |
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| T |
46531291 |
cactccaaactgtgctcagcatagtagctgccggttccgagggtccgacgcaatgtcagcttctctccttccttggttcaaaatccattgatcatctcaa |
46531390 |
T |
|
| Q |
226 |
ctccttgtcctctcacctcgtttcccatgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcatacgctatttgggttgaaaaaacg |
325 |
Q |
| |
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|||||| ||| |||||||| || || ||||||| | |||||||||||| ||||| || ||||||| || || || | ||| |||||||| | |
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| T |
46531391 |
ctccttatccactcacctctttacctctgtgcttgatgacgctgctccctttggtggaccacagttgtcttttgtcaactctgtgtggtttgaaaaatcc |
46531490 |
T |
|
| Q |
326 |
ctttctctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcattaacaaggta |
409 |
Q |
| |
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|||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||| ||||||||| ||||||||| |
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| T |
46531491 |
ctttctctttacccttccttcaaagaaattgttgatactaattattttgccactctcagatcacttgatttcataaacaaggta |
46531574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 46469889 - 46469957
Alignment:
| Q |
311 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
379 |
Q |
| |
|
|||||||| |||| ||||||||| | ||||||||||||||||| || | |||| ||||||| |||||| |
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| T |
46469889 |
tgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccact |
46469957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 46550190 - 46550126
Alignment:
| Q |
315 |
ttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
379 |
Q |
| |
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||||| |||| ||||||||| | |||||||| || ||||||| |||||| |||||||||||||| |
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|
| T |
46550190 |
ttgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccact |
46550126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 16729319 - 16729393
Alignment:
| Q |
26 |
aaatcaatcgcaaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaa |
100 |
Q |
| |
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| T |
16729319 |
aaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaa |
16729393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 17706391 - 17706465
Alignment:
| Q |
26 |
aaatcaatcgcaaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaa |
100 |
Q |
| |
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|||||| || ||||||||||||| || ||||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
17706391 |
aaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaa |
17706465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 17716379 - 17716552
Alignment:
| Q |
26 |
aaatcaatcgcaaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaacgaaacgtagtgctttcgcccttgt |
125 |
Q |
| |
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|||||| || ||||||||||||| || ||||||||||||||||| ||||||||||||| | || |||||||| || || ||| |||| || || | |
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| T |
17716379 |
aaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaaaagaatgttgtgttttcaccattat |
17716478 |
T |
|
| Q |
126 |
cactccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctc |
199 |
Q |
| |
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| ||| | || |||||||||| || || | || |||||||||||||||||| || ||||||||||||||| |
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| T |
17716479 |
cgctcaacaccgtgctcagtatgatcgctaccggctccgagggtcccactcaaaaacaacttctctccttcctc |
17716552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 16720456 - 16720520
Alignment:
| Q |
36 |
caaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaa |
100 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| ||||||||||||| | || |||||||| |
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|
| T |
16720456 |
caaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaa |
16720520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 17697470 - 17697534
Alignment:
| Q |
36 |
caaacctaaccaagagttatatgaacatcaccaaacatttgttatccaatccagaattcaaagaa |
100 |
Q |
| |
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||||||||||||| | || ||||||||||||||||| ||||||||||||| | || |||||||| |
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| T |
17697470 |
caaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaa |
17697534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 9693292 - 9693228
Alignment:
| Q |
311 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggc |
375 |
Q |
| |
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||||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||||||| |
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|
| T |
9693292 |
tgggtagagaaaaccctttctcttcaaccttccttcaaagaaaccatgtctactgattataaggc |
9693228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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