View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_4 (Length: 490)
Name: NF18601_low_4
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 5025074 - 5024584
Alignment:
| Q |
1 |
atgcttcaatctaggagggatggttcaatcacaaatgagacaccatattcacaattttccaagaataacgaaccttcaacaaaggcctcaaatcggtccc |
100 |
Q |
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| T |
5025074 |
atgcttcaatctaggagggatggttcaatcacaaatgagacaccatattcacaattttccaagaataacgaaccttcaacaaaggcctcaaatcggtccc |
5024975 |
T |
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| Q |
101 |
tctcggtctatggtgaaattgaaaaaaggatggcggatctagagttcaaaaaatccggaaaggatcttagagcccttaaacagattcttgaagcaatgca |
200 |
Q |
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| T |
5024974 |
tctcggtctatggtgaaattgaaaaaaggatggcggatctagagttcaaaaaatccggaaaggatcttagagcccttaaacagattcttgaagcaatgca |
5024875 |
T |
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| Q |
201 |
cagatacaaagaatcattagatactgcaagtgatcaggcttcaaattctccgtatgacaatacgagtaatagtagtgtcggtgaaagcttgaatgtacaa |
300 |
Q |
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| T |
5024874 |
cagatacaaagaatcattagatactgcaagtgatcagacttcaaattctccgtatgacaatacgagtaatagtagtgtcggtgaaagcttgaatgtacaa |
5024775 |
T |
|
| Q |
301 |
agtccaagaacacggcagaagaacccgacatctgtcacagctgagaggttgagttcaactcagggtagtaaatctccaattgtcatcatgaaaccaacaa |
400 |
Q |
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| T |
5024774 |
agtccaagaacacggcagaagaacccgacatctgtcacagctgagaggttgagttcaactcagggtagtaaatctccaattgtcatcatgaaaccaacaa |
5024675 |
T |
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| Q |
401 |
aggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatcatcaagtaa-aaggtttaccgcagtgatcctac |
490 |
Q |
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| T |
5024674 |
aggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatcatcaggtaacaaggtttaccgcagtgatcctac |
5024584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 4559403 - 4559307
Alignment:
| Q |
109 |
tatggtgaaattgaaaaaaggatggcggatctagagttcaaaaaatccggaaaggatcttagagcccttaaacagattcttgaagcaatgcacagat |
205 |
Q |
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| T |
4559403 |
tatggcgaaattgagaaaaggttgggggaactcgagttcaaaaagtccggaaaggatcttagagcacttaaacagattcttgaagcaatgcagagat |
4559307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 458
Target Start/End: Complemental strand, 4559172 - 4559078
Alignment:
| Q |
364 |
ggtagtaaatctccaattgtcatcatgaaaccaacaaaggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatc |
458 |
Q |
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|||||||||| ||||||||||||| |||||||||||| || | |||||| | |||||| || |||| ||||| ||||||||| || |||||| |
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| T |
4559172 |
ggtagtaaattaccaattgtcatcacgaaaccaacaaaagtgactagaaaagccaataatcctccttctacagaactgccaattcctgataaatc |
4559078 |
T |
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