View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18601_low_6 (Length: 349)
Name: NF18601_low_6
Description: NF18601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18601_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 10031411 - 10031750
Alignment:
| Q |
1 |
agagctgttacgtgtgttaattgatctcacccattagtttaagattggtcggttcacattacaactttacaatgttatttttaaataatatttgccattg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10031411 |
agagctgttacgtgtgttaattgatctcacccattagtttaagattggtcggttcacattacaactttacaatgttatttttaaataatatttaccattg |
10031510 |
T |
|
| Q |
101 |
ttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttc----ctaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10031511 |
ttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttcctaactaa |
10031610 |
T |
|
| Q |
197 |
ctttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacaggtaatttgtaatttaatttctttttatatga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031611 |
ctttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacaggtaatttgtaatttaatttctttttatatga |
10031710 |
T |
|
| Q |
297 |
tgttgaataaatggagtttgcaaccattcaccttcaacat |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10031711 |
tgttgaataaatggagtttgcaaccattcaccttcaacat |
10031750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 10053324 - 10053663
Alignment:
| Q |
1 |
agagctgttacgtgtgttaattgatctcacccattagtttaagattggtcggttcacattacaactttacaatgttatttttaaataatatttgccattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
10053324 |
agagctgttacgtgtgttaattgatctcacccattagtttaagattggtcggttcacattacaactttacaatgttatttttaaataatatttaccattg |
10053423 |
T |
|
| Q |
101 |
ttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttcc----taa |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
10053424 |
ttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgcttgtcgttagttcctaattaa |
10053523 |
T |
|
| Q |
197 |
ctttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacaggtaatttgtaatttaatttctttttatatga |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
10053524 |
ctttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacgggtaatttgtaatttaatttctttttatatga |
10053623 |
T |
|
| Q |
297 |
tgttgaataaatggagtttgcaaccattcaccttcaacat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10053624 |
tgttgaataaatggagtttgcaaccattcaccttcaacat |
10053663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 137 - 336
Target Start/End: Original strand, 10074304 - 10074495
Alignment:
| Q |
137 |
gtcacacattaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttcctaactttcccttattacagttttattcagactgtatgatctta |
236 |
Q |
| |
|
||||| || |||| || ||||||||| | |||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
10074304 |
gtcacgcagtaaccgcgtggaatccagatcctaattcatatgcttgttgtgatttcctaactttcccttattacagttttattcagactgtatgatctca |
10074403 |
T |
|
| Q |
237 |
aacagcaaggatatatagacagagaacaggtaatttgtaatttaatttctttttatatgatgttgaataaatggagtttgcaaccattcaccttcaacat |
336 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||| |||| |
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|
| T |
10074404 |
aacagcaaggatatattgacagagaacag-------gtaatttaatttctttttatatggtgttgcataaatggagttt-caaccactcaccttctacat |
10074495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 10063699 - 10063807
Alignment:
| Q |
144 |
attaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttcctaactttcccttattacagttttattcagactgtatgatcttaaacagca |
243 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| |||| || | |||||||||||| |||||||||||||||||||| |||||||||| |||||||| |
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| T |
10063699 |
attaactgcgtggaatccaaatcctaattcatatggttgttgtgatctcctaactttcctttattacagttttattcagagtgtatgatctcaaacagca |
10063798 |
T |
|
| Q |
244 |
aggatatat |
252 |
Q |
| |
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||||||||| |
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| T |
10063799 |
aggatatat |
10063807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 12534362 - 12534395
Alignment:
| Q |
273 |
gtaatttaatttctttttatatgatgttgaataa |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
12534362 |
gtaatttaatttctttttatatgatgttgaataa |
12534395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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