View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_high_10 (Length: 386)
Name: NF18602_high_10
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 27507219 - 27507580
Alignment:
| Q |
1 |
ataagttgtatccacagaacaaaattagttttgctatttcaattagctaatggggaaaggacctaccatcaaatgtacatgaaagaataagggaaaagaa |
100 |
Q |
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| T |
27507219 |
ataagttgtatccacagaacaaaatcagttttgctaattcaattagctaacggggaaaggacctaccatcaaatgtacatgaaagaataagggaaaaaaa |
27507318 |
T |
|
| Q |
101 |
tatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccagacgattat |
200 |
Q |
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| T |
27507319 |
tatgattcaaagaacaagtgtgtgctactcatgcgactttgataacgcctattaagagttatttggaataacatgcacatcagatgatccagacgattat |
27507418 |
T |
|
| Q |
201 |
aacttttttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagagaaataat |
300 |
Q |
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| T |
27507419 |
aacttttttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagagaaataat |
27507518 |
T |
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| Q |
301 |
tgttttcatttaatgaccgtcttacgattctatattgaacaattgtcatactggagcctttg |
362 |
Q |
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| T |
27507519 |
tgttttcatttaatgaccgtcttacgattctatattgaacaattgtcatactggagcctttg |
27507580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 53 - 294
Target Start/End: Original strand, 27502259 - 27502500
Alignment:
| Q |
53 |
gggaaaggacctaccatcaaatgtacatgaaagaataagggaaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttt |
152 |
Q |
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| T |
27502259 |
gggaaaggaattaccaccaaattaacatggaagaataaggaaaaagaatatgattcaaagaacaagtgtgtactattcaagcgattttgatatcaccttt |
27502358 |
T |
|
| Q |
153 |
taagcgttatttggaataacatgcacatcagatgatccagacgattataacttttttaggcattaacagagtgaaattaaaatattgttagagtgcactt |
252 |
Q |
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| T |
27502359 |
gaagtgttatttggagcaacatgcagatcagatgacccagacgattataactattttaggcattaacagactgaaattaaaattttgttagagagcactt |
27502458 |
T |
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| Q |
253 |
gtagtgaaatgttaacattggacaatttcttttcaagagaga |
294 |
Q |
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| T |
27502459 |
gtagtgaaatcttaacattagacaatttcttttcaagagaga |
27502500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 94 - 322
Target Start/End: Complemental strand, 27484804 - 27484577
Alignment:
| Q |
94 |
aaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccaga |
193 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| |||||||| ||||||||| ||| | |
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| T |
27484804 |
aaaataatatgactcaaagaacaagtgtgtgctattcatgcgacttggataatgcctttgaagcattatttggagcaacatgcagatcagatgacccaaa |
27484705 |
T |
|
| Q |
194 |
cgattataacttttttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagag |
293 |
Q |
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| T |
27484704 |
caattataacttttttaggcattaacagactgaaattaaaatgttgttagattgcatttgtagtgaaatgttaacattggacagtttcttttcaaaagag |
27484605 |
T |
|
| Q |
294 |
aaataattgttttcatttaatgaccgtct |
322 |
Q |
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| T |
27484604 |
aaattaat-ttttcattcaatgatcgtct |
27484577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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