View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_high_11 (Length: 356)
Name: NF18602_high_11
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 20688720 - 20689074
Alignment:
| Q |
1 |
aaatcccgacaacggtgaaatccagagtggatttgaagacagcggctttgggaaatggtctactagttggtcgcagcaattcattgtgctgttaaaaaga |
100 |
Q |
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| T |
20688720 |
aaatcccgacaacggtgaaatccagagtggatttgaagacagcggctttgggaaatggtctactagttggtcgcagcaattcattgtgctgttaaaaaga |
20688819 |
T |
|
| Q |
101 |
gacctgaaagagagaaaacatgaaccattctctgtcctgcgaatttctaagatcgttgttattgcccttcttacaggactactttggtataagtctagtg |
200 |
Q |
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| T |
20688820 |
gacctgaaagagagaaaacatgaaccattctccgtcctgcgaatttctaagatcgttgtgattgcccttcttacaggactactttggtataagtctagtg |
20688919 |
T |
|
| Q |
201 |
tttcgcacttgcaggatcaggtaataagattttcaattc--------------atgaaaataagttgtgttcctaagataccagatttagttcaattgtg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20688920 |
tttcgcacttgcaggatcaggtaataagattttcaattcatgaaaaaggaaaaatgaaaataagttgtgttcctaagatatcagatttagttcaattgtg |
20689019 |
T |
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| Q |
287 |
tagaatttcgcttataaaatattagcaaatatacatgattcatgaatggcaaagg |
341 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20689020 |
tagaatttggcttataaaatattagcaaacatacatgattcatgaatggcaaagg |
20689074 |
T |
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