View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_high_3 (Length: 599)
Name: NF18602_high_3
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 54499101 - 54498515
Alignment:
| Q |
16 |
gaatatttatcaaataacaaatatttaaatttgttagattagtgctgtcatcgtaaatgtgttttcc-----------------aggaaaacatataact |
98 |
Q |
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| T |
54499101 |
gaatatttatcaaataacaaatatttaaatttgttagattagtgctgtcatcgtaaatgtgttttccttaatctaaaattttccaggaaaacatataact |
54499002 |
T |
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| Q |
99 |
ttcaaagtgtatttaataatcaagcgataagatatgtgtgtatcacaattattcacttaagat---------ggggatgcttctttcacaaatgtttttc |
189 |
Q |
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| T |
54499001 |
ttcaaagtgtatttaataatcaagcaataagatatgtgcgtatcacaattattcacttaagattgacaccatggggatgcttctttcacaaatgtttttc |
54498902 |
T |
|
| Q |
190 |
cctctgatcatgtttattaccggttgtttttgtcctagtagagcccaagattgtggtggaagtaatgttcaaaatacagtcattgttgaccaacaaccgg |
289 |
Q |
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| T |
54498901 |
cctctaatcatgtttattactggttgtttttgtcttagtagagcccaagattgtggtggaagtaatgttcaaaatacagtcattgttgaccaacaaccgg |
54498802 |
T |
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| Q |
290 |
gaaagggtaattatacaacaatcatatctgcctgccatatattctatagagcaaaataacaatcaatggtttaagattaacataaatccgggcgtctatt |
389 |
Q |
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| T |
54498801 |
gaaagggtaattatacaacaatcatatctgcctgccatatattctatagagcaaaataacaatcaatggtttaagattcacataaatccgggcatctatt |
54498702 |
T |
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| Q |
390 |
ggtaagttaaaatgttgttacaagtctaatttattatataaaatattacagtttagaataaatcacactcccttcctttctttcagtaaaagatgtttga |
489 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
54498701 |
ggtaagttaaaatgttgttacacgtttaatttattatataaaatattaaagtttagaataaatcaca----cttcctttctttcggtaaaagatgtttga |
54498606 |
T |
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| Q |
490 |
attacattttctttctttacgcgttaaaagattaatattcacgcgtaaaaattgtgtagggaaaggattactattcccatttcgagtccat |
580 |
Q |
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| T |
54498605 |
attacattttctctctttacgcgttaaaagattaatattcacgcgtaaaaattgtgtagggaaacgattactattcccatttcgagtccat |
54498515 |
T |
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