View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_high_8 (Length: 399)
Name: NF18602_high_8
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 191 - 385
Target Start/End: Complemental strand, 44093203 - 44093005
Alignment:
| Q |
191 |
agtatgcatgacaaaacaattgcattcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
290 |
Q |
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| T |
44093203 |
agtatgcatgacaaaacaattgcattcgttgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaat |
44093104 |
T |
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| Q |
291 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacg----gatgggcttaccgatttccaaaaaccaatacgaccatcttata |
385 |
Q |
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| T |
44093103 |
gttggatggtaatatggtcttgtaaaagcacgtggagctattattcctgacggatcgatgggcttacagatttccaaaaaccaatatgaccatcttata |
44093005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 387
Target Start/End: Complemental strand, 39278738 - 39278565
Alignment:
| Q |
214 |
attcattgggtagacaacagtttcaatctatgatgtgtatggtcactggtggacttgagaggccagaagttgaaaatgttggatggtaatatggtcttgt |
313 |
Q |
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| T |
39278738 |
attcattgggccgtcaacaatttcaatctctgatgtgtatggccactggtggagaagagagtccagaagttcaaaatgtgggatgggagtatgatcttgt |
39278639 |
T |
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| Q |
314 |
aaaagcacgtggagctattattcctgacggatgggcttaccgatttccaaaaaccaatacgaccatcttatatt |
387 |
Q |
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| T |
39278638 |
aaaacaccgcggagctatacgtcctgatggctgggcttacaggtttaccaagactaataccaccatcttatatt |
39278565 |
T |
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