View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_high_9 (Length: 392)
Name: NF18602_high_9
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 6534197 - 6534562
Alignment:
| Q |
19 |
atgttggcatctgaggaaaaaattgaggcggtgatgcagtttcttgttaatcacatgggttgggagtctaatgtacttgccaaacatccgatgcttctta |
118 |
Q |
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| T |
6534197 |
atgttggcatctgaggaaaaaattgaggcggtgatgcagtttcttgttaatcacatgggttgggaatctaatgtacttgccaaacatccgatgcttctta |
6534296 |
T |
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| Q |
119 |
tgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacctttcaa |
218 |
Q |
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| T |
6534297 |
tgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacctttcaa |
6534396 |
T |
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| Q |
219 |
agtctctgaggatctgtttttgaagagatatgtgaattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatgcttcaact |
318 |
Q |
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| T |
6534397 |
agtctctgaggatctgtttttgaagagatatgtgaattgctttgaggaagaagcatctcagctgttgaagttgtatgaagagaaaagagatgcttcaact |
6534496 |
T |
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| Q |
319 |
ttcaaataaggttttgaaaaaagattcacagccacgatcttggaagcaacacaaagggtctctgct |
384 |
Q |
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| T |
6534497 |
ttcaaataaggttttgaaaaaagattcgcagccacgatcttggaagcaacacaaagggtctctgct |
6534562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 62 - 310
Target Start/End: Original strand, 6542989 - 6543237
Alignment:
| Q |
62 |
ttgttaatcacatgggttgggagtctaatgtacttgccaaacatccgatgcttcttatgatgagtttagagaaaagggttattcctagggcttttgtttt |
161 |
Q |
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| T |
6542989 |
ttgttgatcacatgggttggaaccctattgtgcttgcaaaacacccaatacttcttttgttgagtcttgagaaaagggttattcctagagcttttgtctt |
6543088 |
T |
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| Q |
162 |
gaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacctttcaaagtctctgaggatctgtttttgaagagatatgtgaattgcttt |
261 |
Q |
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| T |
6543089 |
gaaatttcttgaatccaaaggtttgattaaggatgctaaattggctgcagctttcaaagtttctgaggatgtgtttttgaagagatttgtgacttgctac |
6543188 |
T |
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| Q |
262 |
gacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
310 |
Q |
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| T |
6543189 |
gaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatg |
6543237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 6540648 - 6540845
Alignment:
| Q |
113 |
ttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacc |
212 |
Q |
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| T |
6540648 |
ttcttttgctgagtcttgagaaaagggttattcttagggcatctttcttgaaatttcttgtgtccaaaggtttgattaaggatgctaaattggcttcatc |
6540747 |
T |
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| Q |
213 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
310 |
Q |
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| T |
6540748 |
tttccaactttatgagtgtttgtttttcaagaagttcgtgaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatg |
6540845 |
T |
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