View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_15 (Length: 322)
Name: NF18602_low_15
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_15 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 31938764 - 31938462
Alignment:
| Q |
1 |
caatagctaaaaaatcctaccgtagaaacacaaattaattgtaatattgtattcaaagaattaaatcagattaaattaatatccatttgcaatgatattg |
100 |
Q |
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| T |
31938764 |
caatagctaaaaaatcctaccatagaaacacaaattaattgtaatattatattcaaagaattaaatcagattaaattaatatccatttgcaatgattttg |
31938665 |
T |
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| Q |
101 |
ttattttttgcatccacttgctatatccttctccacttttctgtattgaccaatatcatccaactactaccaatataatacctttcccatataattctac |
200 |
Q |
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| T |
31938664 |
ttattttttgcatccacttgctatatccttctccactttcccgtattgaccaatatcatccaagtactacccgtataatacctttcccatataattctac |
31938565 |
T |
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| Q |
201 |
aaagctactctatttatgtaagttacaaaagctactgtataagtttgtcttatgttttaattttatttttctatatatatgttggctttgctcaagtcga |
300 |
Q |
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| T |
31938564 |
aaagctactctatttatgtaagttacaaaagctactgtataagtttgtcttattttttaattttatttttctatatatatgttgcctttgctcaagtcga |
31938465 |
T |
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| Q |
301 |
acc |
303 |
Q |
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| T |
31938464 |
acc |
31938462 |
T |
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Target: scaffold0170 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 18985 - 19054
Alignment:
| Q |
53 |
tcaaagaattaaatcagattaaattaatatccatttgcaatgatattgttattttttgcatccacttgcta |
123 |
Q |
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| T |
18985 |
tcaatgaattaaatcagattaaattaacatccacttgcaatggt-ttgtcattttttccatccacttgcta |
19054 |
T |
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