View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_16 (Length: 320)
Name: NF18602_low_16
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_16 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 27210957 - 27210667
Alignment:
| Q |
12 |
gaaaattgaaggggatctttttatccaatggagttaacgatcatcgaggaatgaagaccttctgaccgacatgagttcctgatatgacctctgcctctag |
111 |
Q |
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| T |
27210957 |
gaaaatcgaaggggatctttttatccgatggagttaacgatgatcgaggaatgaaggccttctgaccgacatgagttcctgatatgacctctgcctctag |
27210858 |
T |
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| Q |
112 |
tacatatgtacccatttttgtgattatcaaccgtgttccattgcataaacccaaattctggtcgttattccttaacaacatgaccggtgcaccaactttc |
211 |
Q |
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| T |
27210857 |
tacatatgtacccatttttgtgattatcaaccatgttccattgcataaacccaaattctggtcgatattccttaacaacatgaccggtgcgccaactttc |
27210758 |
T |
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| Q |
212 |
aacctcagcttgtgagatggcagtccggatgcagttattgtgttaagaaattctggagtatgcacatcatcggggccaccggcattagaact |
303 |
Q |
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| T |
27210757 |
aacctcagcctttgagatggcagtccggatgcagttattgtgttaagaaa-tccagagtatgcacgtcatcggggccaccggcattagaact |
27210667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 16788716 - 16788933
Alignment:
| Q |
14 |
aaattgaaggggatctttttatccaatggagttaacgatcatcgaggaatgaagaccttctgaccgacatgagttcctgatatgacctctgcctctagta |
113 |
Q |
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| T |
16788716 |
aaattgatagggatcttgttatcagatggagttaatgatagtcgagggatgaaaaccttttgtcccacattagttccagataagacctttgcctctaata |
16788815 |
T |
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| Q |
114 |
catatgtacccatttttgtgattatcaaccgtgttccattgcataaacccaaattctggtcgttattccttaacaacatgaccggtgcaccaactttcaa |
213 |
Q |
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| T |
16788816 |
cataagtccccatttttgtgattatcaaacgtgttccgttgcataaacccaaattctgatcgatattccgcaacagcatcacaggtgcccccactttcaa |
16788915 |
T |
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| Q |
214 |
cctcagcttgtgagatgg |
231 |
Q |
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| T |
16788916 |
tctcagtttgtgagatgg |
16788933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 15494957 - 15495003
Alignment:
| Q |
236 |
ccggatgcagttattgtgttaagaaattctggagtatgcacatcatc |
282 |
Q |
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| T |
15494957 |
ccggatgcagtaatagtgttaagaaattctggtgtgtgcacatcatc |
15495003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 291
Target Start/End: Original strand, 23307481 - 23307685
Alignment:
| Q |
87 |
ttcctgatatgacctctgcctctagtacatatgtacccatttttgtgattatcaaccgtgttccattgcataaacccaaattctggtcgttattccttaa |
186 |
Q |
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| T |
23307481 |
ttcctgatataacctttgcctccaagacatatgttcccatccttgtaattattaaacgtgttccattgcagaggcctaaattttggtcgatctttctcaa |
23307580 |
T |
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| Q |
187 |
caacatgaccggtgcaccaactttcaacctcagcttgtgagatggcagtccggatgcagttattgtgttaagaaattctggagtatgcacatcatcgggg |
286 |
Q |
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| T |
23307581 |
caacataacaggaacacccaccttcaacctcaacttatgtgttggaagtccagaagcagttatcgtgttcaaaaattccggagtatacagatcattggga |
23307680 |
T |
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| Q |
287 |
ccacc |
291 |
Q |
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| T |
23307681 |
ccacc |
23307685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 32262957 - 32262924
Alignment:
| Q |
110 |
agtacatatgtacccatttttgtgattatcaacc |
143 |
Q |
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| T |
32262957 |
agtacatatctacccatttttgtgattatcaacc |
32262924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 43013 - 42846
Alignment:
| Q |
113 |
acatatgtacccatttttgtgattatcaaccgtgttccattgcataaacccaaattctggtcgttattccttaacaacatgaccggtgcaccaactttca |
212 |
Q |
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| T |
43013 |
acataagtccccatctttgtaattatcaaccgggttccattacataatcctaaattttggtcaatatttctcaacaacatgacaggaactcctactttca |
42914 |
T |
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| Q |
213 |
acctcagcttgtgagatggcagtccggatgcagttattgtgttaagaaattctggagtatgcacatca |
280 |
Q |
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| T |
42913 |
atctcagaatatgatttggaagaccagaagtagttattgtatttaaaaattcaggagtatgcacatca |
42846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 23143992 - 23144038
Alignment:
| Q |
236 |
ccggatgcagttattgtgttaagaaattctggagtatgcacatcatc |
282 |
Q |
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| T |
23143992 |
ccggatgcagtaatagtgttaagaaattctggtgtgtgcacatcatc |
23144038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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