View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_17 (Length: 301)
Name: NF18602_low_17
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 12558788 - 12559084
Alignment:
| Q |
1 |
tatttcctgatcccctcttagacttgggtccaactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaannnnnnnnnaaagt |
100 |
Q |
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| T |
12558788 |
tatttcctgatcccctcttagacttgggtccaactcaagcctttgagaattcctggaaggattccctttggggtaaagtcctacaattttttttcaaagt |
12558887 |
T |
|
| Q |
101 |
aaaagtcattcaacttttacagtttgctcatgctctgccgatttgctaatgttaacaatgatcttttggctacctatacaaaatattttggtagatttgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12558888 |
aaaagtcattcaacttttacagtttgctcatgctctgccgatttgctaatgttaataatgatcttttggctacctatgcaaaatattttggtagatttgc |
12558987 |
T |
|
| Q |
201 |
tatcnnnnnnnggattttcatgtgcgaaaagtattaaggaataacaattgtctacgtacgttaatcttagtttctgcatgttatcacaggttctgct |
297 |
Q |
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| T |
12558988 |
tatcttttttaggattttcatgtgcgaaaagtatgaaggaataacaattgtctacttacgttaatcttagtttctgcatgttatcatagtttctgct |
12559084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 9212387 - 9212332
Alignment:
| Q |
31 |
caactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa |
86 |
Q |
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| T |
9212387 |
caactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaa |
9212332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 35970323 - 35970268
Alignment:
| Q |
31 |
caactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa |
86 |
Q |
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| T |
35970323 |
caactcaagccttcgagaatttctggaaggactccttttggggtaaagtcctacaa |
35970268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 9365154 - 9365208
Alignment:
| Q |
32 |
aactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa |
86 |
Q |
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|||| ||||||| ||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
9365154 |
aacttaagcctttgagaatttctggaaggactccttttggggtaaagtcctacaa |
9365208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 9290860 - 9290790
Alignment:
| Q |
15 |
ctcttagacttgggtccaactcaagccttcgagaattcctggaaggattcccttt--ggggtaaagtccta |
83 |
Q |
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| T |
9290860 |
ctcttagactagagttcaactctagtcttcgagaatttctggaaggactcccttttaggggtaaagtccta |
9290790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 9371509 - 9371558
Alignment:
| Q |
37 |
aagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa |
86 |
Q |
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||||||| ||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
9371509 |
aagcctttgagaatttttggaaggactccctttggggtaaaatcctacaa |
9371558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 31857592 - 31857548
Alignment:
| Q |
42 |
ttcgagaattcctggaaggattccctttggggtaaagtcctacaa |
86 |
Q |
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| T |
31857592 |
ttcgagaatttctggaaggactccctttggggtaaagtcctacaa |
31857548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 24694839 - 24694910
Alignment:
| Q |
14 |
cctcttagacttgggtccaactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa |
86 |
Q |
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||||||| ||||||| | |||||||||||| ||||||| ||| ||||| |||||||| ||||||||||||||| |
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| T |
24694839 |
cctcttaaacttggggc-aactcaagcctttgagaatttctgaaaggactccctttgaggtaaagtcctacaa |
24694910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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