View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_18 (Length: 292)
Name: NF18602_low_18
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 27147039 - 27147311
Alignment:
| Q |
1 |
ttgggagcaaagttgaattcgtgatatcttctcactctataaatacttaaattgcattcatctctacacacttgaattgcatttcctctatcaaaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27147039 |
ttgggagcaaagttgaattcgtgatatcttctcactctataaatacttaaattgcattcatctctacacacttgaattgcatttcctctatcaaaatttc |
27147138 |
T |
|
| Q |
101 |
caaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgcagaccctgaccctaaat |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||||||||| || | |||||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
27147139 |
caaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgcttgcttttggccattccattagcaaatgcagaccctgatcctaaat |
27147238 |
T |
|
| Q |
201 |
gtaagaacgtggcagaaagtataataccatgcgttgagtacattatgacccctgatgcatccaacccccctgc |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27147239 |
gtaagaacgtggcagaaagtataataccatgcgttgagtacattatgacccctgatgcatccaacccccctgc |
27147311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 55 - 273
Target Start/End: Original strand, 27157957 - 27158169
Alignment:
| Q |
55 |
cattcatctctacacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgc |
154 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | ||| |
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| T |
27157957 |
cattcatctccacacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgc |
27158056 |
T |
|
| Q |
155 |
ttggttttagccattccattagcaaatgcagaccctgaccctaaatgtaagaacgtggcagaaagtataataccatgcgttgagtacattatgacccctg |
254 |
Q |
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|||||||| ||||||||||||||||||| ||| |||| | |||| | |||||| ||||| |||| |||||||| |||||||||||| |||||||| |
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| T |
27158057 |
ttggttttggccattccattagcaaatg------ctggcccttactgtagggacgtggtagaaactatactaccatgcattgagtacattacgacccctg |
27158150 |
T |
|
| Q |
255 |
atgcatccaacccccctgc |
273 |
Q |
| |
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|||||||| || |||||| |
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| T |
27158151 |
gtgcatccaccctccctgc |
27158169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 27133994 - 27134172
Alignment:
| Q |
8 |
caaagttgaattcgtgatatcttctcactctataaatacttaa--attgcattcatctctacacac--ttgaattgcatttcctctatcaaaatttccaa |
103 |
Q |
| |
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|||||||||||| ||| |||||||| ||||||||||||||| | ||| |||||||||| |||||| |||||| ||||||||||||||||| | ||||| |
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| T |
27133994 |
caaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctccacacacacttgaatagcatttcctctatcaaa-tctccaa |
27134092 |
T |
|
| Q |
104 |
atcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc |
183 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
27134093 |
accatggctagctcaatgcttgttaagattacttgtatgtctatgctatgcttggttttggtcattccattatcaaatgc |
27134172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 27165508 - 27165625
Alignment:
| Q |
66 |
acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc |
165 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||| || |
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| T |
27165508 |
acacaattgaattgcatttcctctatcaaaatttccaaatcatggctacctcaatgcttgttaagatcacttgtttgtctgtgatatgcttggttttggc |
27165607 |
T |
|
| Q |
166 |
cattccattagcaaatgc |
183 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
27165608 |
cattccattagccaatgc |
27165625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 27220198 - 27220315
Alignment:
| Q |
66 |
acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc |
165 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | |
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| T |
27220198 |
acacacttgaatagcatttcctctatcaaaatttccaaatcatggctagttcaatgcttttgaaggttacttgtttggctatgatatgcttggttttggg |
27220297 |
T |
|
| Q |
166 |
cattccattagcaaatgc |
183 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
27220298 |
cattccattagccaatgc |
27220315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 27281666 - 27281777
Alignment:
| Q |
72 |
ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc |
171 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | |||||| |
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| T |
27281666 |
ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattcc |
27281765 |
T |
|
| Q |
172 |
attagcaaatgc |
183 |
Q |
| |
|
| |||| ||||| |
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|
| T |
27281766 |
actagccaatgc |
27281777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 27304360 - 27304471
Alignment:
| Q |
66 |
acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc |
165 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||| ||||| ||||||||||||| | |
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| T |
27304360 |
acacacttgaattgcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaagttacttgcttggctatgatatgcttggttttggg |
27304459 |
T |
|
| Q |
166 |
cattccattagc |
177 |
Q |
| |
|
||||||| |||| |
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|
| T |
27304460 |
cattccactagc |
27304471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 27296134 - 27296245
Alignment:
| Q |
72 |
ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc |
171 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||| | ||||||||||||| | |||||| |
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|
| T |
27296134 |
ttgaattgcatttcctcttcaaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctacgatatgcttggttttgggcattcc |
27296233 |
T |
|
| Q |
172 |
attagcaaatgc |
183 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
27296234 |
actagccaatgc |
27296245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 27271555 - 27271666
Alignment:
| Q |
72 |
ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc |
171 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| ||||| ||| | ||| ||||||||||| ||||| ||||||||||||| |||||| |
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|
| T |
27271555 |
ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatccttgtcaaggttacttgtttggctatgatatgcttggttttgagcattcc |
27271654 |
T |
|
| Q |
172 |
attagcaaatgc |
183 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
27271655 |
actagccaatgc |
27271666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 27243101 - 27243188
Alignment:
| Q |
96 |
atttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | ||||||| |||| ||||| |
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|
| T |
27243101 |
atttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagccaatgc |
27243188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 27249046 - 27249157
Alignment:
| Q |
72 |
ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc |
171 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| |||||| || | ||| ||||||||||| ||||| ||||||| ||||| | |||||| |
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|
| T |
27249046 |
ttgaattacatttcctcttcgaaaatttccaaatcatggctagttcaatgtttgtcaaggttacttgtttggctatgatatgcttagttttgggcattcc |
27249145 |
T |
|
| Q |
172 |
attagcaaatgc |
183 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
27249146 |
actagctaatgc |
27249157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 27301500 - 27301620
Alignment:
| Q |
66 |
acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgctt---cttaagattacttgtttgtctatgctatgcttggtttt |
162 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||| ||||| ||||||||||||| |
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|
| T |
27301500 |
acacacttgaatagcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtgatcaaagttacttgcttggctatgatatgcttggtttt |
27301599 |
T |
|
| Q |
163 |
agccattccattagcaaatgc |
183 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
27301600 |
gtgcattccattagccaatgc |
27301620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 27312620 - 27312697
Alignment:
| Q |
106 |
catggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc |
183 |
Q |
| |
|
|||||||||||||||| || | |||||||||| ||| ||||| ||||||||||||| | || ||| ||||| ||||| |
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|
| T |
27312620 |
catggctagctcaatgtttgtcaagattactttcttggctatgatatgcttggttttgggcactcccttagccaatgc |
27312697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 14890014 - 14889948
Alignment:
| Q |
96 |
atttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggtttt |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
14890014 |
atttccaaatcatggctagttcaatgcttaccaaggttacttgtttggctatgatatgcttggtttt |
14889948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 14884356 - 14884282
Alignment:
| Q |
103 |
aatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagc |
177 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||| |||| |
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|
| T |
14884356 |
aatcatggctagttcaatgcttaccaaggttacttgtttggctatgttatgcttggttttgggcattccaatagc |
14884282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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