View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_22 (Length: 243)
Name: NF18602_low_22
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 44967691 - 44967568
Alignment:
| Q |
1 |
tctttatactccacaaatttaaatttattagtatgaaatttgagttcaaattcacaattgacataacaatatatcattaaatgtacgtataaaataaatg |
100 |
Q |
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| T |
44967691 |
tctttatgctccacaaatttaaatttattagtatgagatttgagttca------caacagacataacaatatatcattaaatatacgtataaaataaatg |
44967598 |
T |
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| Q |
101 |
tacactaacacaaaatatattaattaaatt |
130 |
Q |
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| T |
44967597 |
tagactaacacaaaatatattaattaaatt |
44967568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 44967568 - 44967521
Alignment:
| Q |
180 |
taaagacatacgactgaatattcgtggaaaacaacctacactaatggt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44967568 |
taaagacatacgactgaatattcgtggaaaacaacctacactaatggt |
44967521 |
T |
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