View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_24 (Length: 240)
Name: NF18602_low_24
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 2045716 - 2045932
Alignment:
| Q |
19 |
acatatgtctttgtcctatac----tgacacgagattgcattcaagtttttcaccttcacaaatttattaatggtagcgatgtttcagtgttaaaaccat |
114 |
Q |
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| T |
2045716 |
acatatgtctttgtcctatacgtactgacacgagattgcattcaagtttttcaccttcgcaaatttattaatggtagcgatgtttcagtgttaaaaccat |
2045815 |
T |
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| Q |
115 |
tgtccatgtctatgccaatgcttcgtagcactccaagatttctaccataattgcaactcattaacgatttgagtccac------atacttgtttatatac |
208 |
Q |
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| T |
2045816 |
tgtccatgtctatggcaatgcttcgtagcactccaagatttctaccataattgtaactcattaacgatttgagtccacatatatatacttgtttatatac |
2045915 |
T |
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| Q |
209 |
gtaactctttgtctctg |
225 |
Q |
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| T |
2045916 |
gtaactctttgtctctg |
2045932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 2049605 - 2049756
Alignment:
| Q |
64 |
ttcaccttcacaaatttattaatggtagcgatgtttcagtgttaaaaccattgtccatgtctatgccaatgcttcgtagcactccaagatttctaccata |
163 |
Q |
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| T |
2049605 |
ttcaccttctcaaattaat-aatggcattgatgtttcagcgttataaccgttttccgtgtctatgtcaatgctttgtagctcttcataatttttacctta |
2049703 |
T |
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| Q |
164 |
attgcaactcattaacgatttgagtccacatacttgtttatatacgtaactct |
216 |
Q |
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| T |
2049704 |
attgtaactctttaaacatttgagtccacatatttgtttatatacctaactct |
2049756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 2053693 - 2053746
Alignment:
| Q |
169 |
aactcattaacgatttgagtccacatacttgtttatatacgtaactctttgtct |
222 |
Q |
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| T |
2053693 |
aactcattaaatatttgagtccacatatttgtttttataggtaactctttgtct |
2053746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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