View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18602_low_25 (Length: 237)

Name: NF18602_low_25
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18602_low_25
NF18602_low_25
[»] chr8 (10 HSPs)
chr8 (1-219)||(906009-906227)
chr8 (1-219)||(894416-894634)
chr8 (38-219)||(548701-548882)
chr8 (38-219)||(23423722-23423903)
chr8 (11-120)||(10201827-10201936)
chr8 (11-120)||(10208900-10209009)
chr8 (65-167)||(1963481-1963583)
chr8 (90-154)||(566313-566377)
chr8 (29-167)||(2018193-2018331)
chr8 (53-158)||(2011429-2011534)
[»] chr6 (4 HSPs)
chr6 (11-219)||(8294378-8294586)
chr6 (11-220)||(33257168-33257377)
chr6 (11-208)||(844950-845147)
chr6 (11-162)||(870234-870385)
[»] scaffold0428 (1 HSPs)
scaffold0428 (11-220)||(1286-1495)
[»] scaffold0184 (1 HSPs)
scaffold0184 (70-192)||(15188-15310)
[»] scaffold0078 (1 HSPs)
scaffold0078 (70-192)||(57534-57656)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 906227 - 906009
Alignment:
Q  1 caataatctcgcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  906227 caataatctcgcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacagtctccaaagttgaaccccaaccacaatga 906128  T
Q  101 ctcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccat 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  906127 ctcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccat 906028  T
Q  201 ttggtaaatactctaatgg 219  Q
    |||||||||||||||||||    
T  906027 ttggtaaatactctaatgg 906009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 894416 - 894634
Alignment:
Q  1 caataatctcgcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatga 100  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  894416 caataatttggcattcatcctttgttcagcaaatagaggccatgcaatcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatga 894515  T
Q  101 ctcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccat 200  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||     
T  894516 ctcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttggttctttccagaaaaccac 894615  T
Q  201 ttggtaaatactctaatgg 219  Q
    |||||||||| ||||||||    
T  894616 ttggtaaataatctaatgg 894634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 548701 - 548882
Alignment:
Q  38 ggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatct 137  Q
    ||||| ||||||| |||||| |||| ||| | || ||| ||| |||||| ||||||||||||| ||||||| |||||| |||||| ||||| |||||| |    
T  548701 ggccaagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaattt 548800  T
Q  138 caacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaatactctaatgg 219  Q
    |||||||||| |||||||||||||| ||||| || |  |||||  | ||||||||||||||   ||||||||| | ||||||    
T  548801 caacttgtggagcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatgg 548882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 23423903 - 23423722
Alignment:
Q  38 ggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatct 137  Q
    ||||| ||||||| |||||| |||| ||| | || ||| ||| |||||| ||||||||||||| ||||||| |||||| |||||| ||||| |||||| |    
T  23423903 ggccaagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaattt 23423804  T
Q  138 caacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaatactctaatgg 219  Q
    |||||||||| |||||||||||||| ||||| || |  |||||  | ||||||||||||||   ||||||||| | ||||||    
T  23423803 caacttgtggagcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatgg 23423722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 10201827 - 10201936
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    ||||||||| |||| || ||| | || ||||||||||||| |||||| ||||| ||||||||||| | |||||||  ||||||||||||||||| |||||    
T  10201827 gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaacc 10201926  T
Q  111 caccaattga 120  Q
    | ||||||||    
T  10201927 ctccaattga 10201936  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 10208900 - 10209009
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    ||||||||| |||| || ||| | || ||||||||||||| |||||| ||||| ||||||||||| | |||||||  ||||||||||||||||| |||||    
T  10208900 gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaacc 10208999  T
Q  111 caccaattga 120  Q
    | ||||||||    
T  10209000 ctccaattga 10209009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 1963583 - 1963481
Alignment:
Q  65 accacactctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaa 164  Q
    ||||||||||| |  ||||||  |||||||||||||  ||||||||||||||| ||||  |||| ||| || | ||  ||||||||||||||||||||||    
T  1963583 accacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaa 1963484  T
Q  165 cca 167  Q
    |||    
T  1963483 cca 1963481  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 566313 - 566377
Alignment:
Q  90 aaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgcccat 154  Q
    ||||| ||||||  ||||| ||| ||||||||| |||||||||||| ||||||||||||||||||    
T  566313 aaccaaaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat 566377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 2018193 - 2018331
Alignment:
Q  29 gcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgac 128  Q
    ||||||||||||||||  || |  ||||| ||||  | ||||||||| |  ||||||  ||||||||| ||| |||| |||||||||| |||||  ||||    
T  2018193 gcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgac 2018292  T
Q  129 caagaatctcaacttgtggtgcccatgatggaacaacca 167  Q
     ||| || | ||  ||||||||||||||||||| |||||    
T  2018293 gaaggatttgaatctgtggtgcccatgatggaataacca 2018331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 2011429 - 2011534
Alignment:
Q  53 ggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgccc 152  Q
    |||||||||| ||||||||| || |  ||||| | ||||||||| |||||||| ||||| |||| ||||| ||||| ||| || | ||  || |||||||    
T  2011429 ggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatttgaatctgaggtgccc 2011528  T
Q  153 atgatg 158  Q
    ||||||    
T  2011529 atgatg 2011534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 8294378 - 8294586
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    |||||||||||||| |||||||| |  |||||||||||||  ||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  8294378 gcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacc 8294477  T
Q  111 caccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaata 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||  |||||||||| |||||||||||||||||    
T  8294478 caccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttttgttctttccaaaaaaccatttggtaaata 8294577  T
Q  211 ctctaatgg 219  Q
    |||||||||    
T  8294578 ctctaatgg 8294586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 33257377 - 33257168
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    |||||||| ||||| |||||||| |  |||||||||||||  || || || ||||||||||||||||||||||||| ||||||||||||||| ||||| |    
T  33257377 gcattcattctttgctctgcaaacaatggccatgcaatcaacggaacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaaac 33257278  T
Q  111 caccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaata 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||  ||||||| |  ||||| |||||||||||    
T  33257277 caccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgtaacaactaatcccttctcttttgttctttcgacaaaaccgtttggtaaata 33257178  T
Q  211 ctctaatggt 220  Q
    ||||||||||    
T  33257177 ctctaatggt 33257168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 844950 - 845147
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    ||||||||| ||||||| ||||| || |||||||| || |  || |  ||||| || ||||| || |  ||||||  ||||||||||||| | |||||||    
T  844950 gcattcatcttttgttcagcaaagagtggccatgctattattggaattccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacc 845049  T
Q  111 caccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaa 208  Q
    |||||||||||| |||||||||||| |||| ||||||||||||  ||||||| || || || ||  ||||  |||||||||| |||||||||||||||    
T  845050 caccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaactactaaacctttcccttttgttctttccaaaaaaccatttggtaaa 845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 870234 - 870385
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    ||||||||| ||||||| ||||| || |||||||| || |  || |  ||||| || ||||| || |  ||||||  ||||||||||||| | |||||||    
T  870234 gcattcatcttttgttcagcaaagagtggccatgctattattggaattccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacc 870333  T
Q  111 caccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaac 162  Q
    |||||||||||| |||||||||||| |||| ||||||||||||  |||||||    
T  870334 caccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaac 870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 1495 - 1286
Alignment:
Q  11 gcattcatcctttgttctgcaaatagaggccatgcaatcacaggcaccccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaacc 110  Q
    |||||||| ||||| |||||||| |  |||||||||||||  || || || ||||||||||||||||||||||||| ||||||||||||||| ||||| |    
T  1495 gcattcattctttgctctgcaaacaatggccatgcaatcaacggtacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaaac 1396  T
Q  111 caccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaata 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||  ||||||| |  ||||| |||||||||||    
T  1395 caccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgtaacaactaatcccttctcttttgttctttcgacaaaaccgtttggtaaata 1296  T
Q  211 ctctaatggt 220  Q
    ||||||||||    
T  1295 ctctaatggt 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 15188 - 15310
Alignment:
Q  70 actctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaat 169  Q
    ||||||||||  ||||  ||||||||||||||| ||||| ||||||| ||||| |||   ||| || |||||||| |||||||||||||  | ||  ||     
T  15188 actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaa 15287  T
Q  170 ccattttctttgtttctttccaa 192  Q
    || ||||||||| ||||||||||    
T  15288 cctttttctttggttctttccaa 15310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 57656 - 57534
Alignment:
Q  70 actctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgaaccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaat 169  Q
    ||||||||||  ||||  ||||||||||||||| ||||| ||||||| ||||| |||   ||| || |||||||| |||||||||||||  | ||  ||     
T  57656 actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaa 57557  T
Q  170 ccattttctttgtttctttccaa 192  Q
    || ||||||||| ||||||||||    
T  57556 cctttttctttggttctttccaa 57534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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