View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18602_low_5 (Length: 517)

Name: NF18602_low_5
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18602_low_5
NF18602_low_5
[»] chr8 (13 HSPs)
chr8 (19-517)||(43907840-43908338)
chr8 (371-482)||(4558681-4558792)
chr8 (375-467)||(34563137-34563229)
chr8 (412-488)||(40280275-40280351)
chr8 (370-464)||(44865659-44865753)
chr8 (370-481)||(29699136-29699247)
chr8 (453-488)||(33553227-33553262)
chr8 (451-482)||(42237498-42237529)
chr8 (452-482)||(35374449-35374479)
chr8 (371-423)||(773169-773221)
chr8 (453-481)||(773294-773322)
chr8 (453-481)||(778354-778382)
chr8 (453-481)||(787788-787816)
[»] chr2 (13 HSPs)
chr2 (375-473)||(31461325-31461423)
chr2 (371-477)||(33197320-33197426)
chr2 (409-482)||(32633693-32633765)
chr2 (371-482)||(11393441-11393553)
chr2 (371-482)||(11410102-11410214)
chr2 (403-482)||(28803582-28803661)
chr2 (439-478)||(42457899-42457938)
chr2 (450-488)||(3227731-3227769)
chr2 (412-482)||(10150679-10150749)
chr2 (411-482)||(31228893-31228966)
chr2 (409-482)||(3673728-3673801)
chr2 (452-488)||(750460-750496)
chr2 (371-467)||(3102576-3102672)
[»] chr5 (10 HSPs)
chr5 (371-482)||(9202824-9202935)
chr5 (451-482)||(12595816-12595847)
chr5 (451-481)||(10363713-10363743)
chr5 (449-479)||(12425532-12425562)
chr5 (371-465)||(26516181-26516275)
chr5 (451-488)||(12242758-12242795)
chr5 (451-479)||(11835240-11835268)
chr5 (374-482)||(35135738-35135846)
chr5 (385-488)||(37611263-37611364)
chr5 (385-488)||(37787993-37788094)
[»] chr1 (14 HSPs)
chr1 (370-482)||(17269133-17269244)
chr1 (403-483)||(45234112-45234192)
chr1 (451-488)||(14737775-14737812)
chr1 (451-488)||(48748653-48748690)
chr1 (430-482)||(11211060-11211112)
chr1 (371-415)||(21516256-21516300)
chr1 (440-478)||(15477530-15477568)
chr1 (375-425)||(24153164-24153214)
chr1 (451-488)||(50319255-50319292)
chr1 (375-419)||(37236-37280)
chr1 (450-478)||(8081849-8081877)
chr1 (456-488)||(29834953-29834985)
chr1 (385-425)||(36602687-36602727)
chr1 (450-478)||(47002954-47002982)
[»] scaffold0024 (2 HSPs)
scaffold0024 (371-482)||(27459-27570)
scaffold0024 (451-479)||(21357-21385)
[»] chr7 (8 HSPs)
chr7 (372-463)||(6552365-6552456)
chr7 (418-477)||(21853197-21853256)
chr7 (371-424)||(5630049-5630102)
chr7 (411-488)||(7244625-7244702)
chr7 (451-488)||(34035902-34035939)
chr7 (371-419)||(8680878-8680926)
chr7 (451-479)||(30180014-30180042)
chr7 (436-488)||(33601163-33601215)
[»] chr6 (9 HSPs)
chr6 (435-482)||(10728579-10728626)
chr6 (396-482)||(10749304-10749389)
chr6 (371-467)||(5328857-5328953)
chr6 (372-483)||(6078364-6078475)
chr6 (451-488)||(2205638-2205675)
chr6 (451-488)||(5731555-5731592)
chr6 (419-479)||(264302-264362)
chr6 (451-479)||(9093635-9093663)
chr6 (435-479)||(9559620-9559664)
[»] chr3 (8 HSPs)
chr3 (371-467)||(54775011-54775107)
chr3 (435-478)||(849609-849652)
chr3 (451-482)||(10101552-10101583)
chr3 (451-482)||(10212477-10212508)
chr3 (451-482)||(15304423-15304454)
chr3 (412-482)||(3182438-3182508)
chr3 (371-425)||(20874433-20874487)
chr3 (397-465)||(16790181-16790249)
[»] scaffold0590 (1 HSPs)
scaffold0590 (373-467)||(1165-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (373-467)||(2716-2810)
[»] chr4 (6 HSPs)
chr4 (371-424)||(4684243-4684296)
chr4 (435-480)||(49803158-49803203)
chr4 (451-479)||(25885822-25885850)
chr4 (410-482)||(30024622-30024694)
chr4 (451-487)||(43505919-43505955)
chr4 (452-488)||(52294036-52294072)


Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 43908338 - 43907840
Alignment:
Q  19 caattgtttagaagcaaaaacaaagaatctctcatcccttgagtggcttgtttcttgcacctttttatttttaataattccatgaccaacttgatcatct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908338 caattgtttagaagcaaaaacaaagaatctctcatcccttgagtggcttgtttcttgcacctttttatttttaataattccatgaccaacttgatcatct 43908239  T
Q  119 gcataataaagtagtgtcacatagttgaactagaagtgttgatctgcatttgaataatatcaattaccataatgagtgaaattaaaaatcttcaattagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908238 gcataataaagtagtgtcacatagttgaactagaagtgttgatctgcatttgaataatatcaattaccataatgagtgaaattaaaaatcttcaattagt 43908139  T
Q  219 atttttggatcaatcaatttagtcttgaagtcctaaagtacaaatgtgattgaggatcattttagaatttcgttaatttcaagactaaactctctaatca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908138 atttttggatcaatcaatttagtcttgaagtcctaaagtacaaatgtgattgaggatcattttagaatttcgttaatttcaagactaaactctctaatca 43908039  T
Q  319 ttacaatttcatgactaaatcagtgtttcactatagtaccatatagagatcatttggataaacatcttaattaaacccttatatcataaatgtttatcat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908038 ttacaatttcatgactaaatcagtgtttcactatagtaccatatagagatcatttggataaacatcttaattaaacccttatatcataaatgtttatcat 43907939  T
Q  419 ataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctatgtcaagtgtttatgtcaatagataaactc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907938 ataagtggttacatacaagttatttctagcgtaaaagataaaataaagtcaaattgttttcataagctatgtcaagtgtttatgtcaatagataaactc 43907840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 4558681 - 4558792
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 470  Q
    |||||||||||| ||||||||  | |||||| |||||| |||||| || |||||| |||  || ||| ||||||||   |||||||||||||||||||||    
T  4558681 tttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaa 4558780  T
Q  471 attgttttcata 482  Q
    ||| ||||||||    
T  4558781 attattttcata 4558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 34563137 - 34563229
Alignment:
Q  375 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 467  Q
    |||||||| ||||||||||| |||||| ||||||  ||||||||||||||| ||| ||| ||||||||||||    ||| |||||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagt 34563229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 488
Target Start/End: Complemental strand, 40280351 - 40280275
Alignment:
Q  412 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||||  || ||| ||||||||||||    ||||||||||||||||| ||||||||||||||||||||    
T  40280351 ttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagtaaaattgttttcataagctat 40280275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 464
Target Start/End: Complemental strand, 44865753 - 44865659
Alignment:
Q  370 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataa 464  Q
    ||||||||||||| ||||||||||  |||||| ||| || ||||||| |||||||| |||| || ||| |||||||| || ||||||| ||||||    
T  44865753 atttggataaacaacttaattaaatgcttatagcattaaagtttatcttataagtgcttacttataagctatttctatcgcaaaagattaaataa 44865659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 29699136 - 29699247
Alignment:
Q  370 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 469  Q
    ||||||||||||  |||| ||||   |||||| ||||||| |||||||||||| || |||  |||||||||||||||    ||||||||||||||||| |    
T  29699136 atttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtca 29699235  T
Q  470 aattgttttcat 481  Q
    || |||| ||||    
T  29699236 aaatgttgtcat 29699247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 488
Target Start/End: Original strand, 33553227 - 33553262
Alignment:
Q  453 aagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33553227 aagataaaataaagtcaaattgttttcataagctat 33553262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Complemental strand, 42237529 - 42237498
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||||||||||||||||||||||    
T  42237529 aaaagataaaataaagttaaattgttttcata 42237498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Complemental strand, 35374479 - 35374449
Alignment:
Q  452 aaagataaaataaagttaaattgttttcata 482  Q
    |||||||||||||||||||||||||||||||    
T  35374479 aaagataaaataaagttaaattgttttcata 35374449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 773169 - 773221
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataag 423  Q
    |||||||||||| ||| ||| ||| |||||| |||||||||||||||| ||||    
T  773169 tttggataaacaactttattcaacacttatagcataaatgtttatcatctaag 773221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 481
Target Start/End: Original strand, 773294 - 773322
Alignment:
Q  453 aagataaaataaagttaaattgttttcat 481  Q
    |||||||||||||||||||||||||||||    
T  773294 aagataaaataaagttaaattgttttcat 773322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 481
Target Start/End: Original strand, 778354 - 778382
Alignment:
Q  453 aagataaaataaagttaaattgttttcat 481  Q
    |||||||||||||||||||||||||||||    
T  778354 aagataaaataaagttaaattgttttcat 778382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 481
Target Start/End: Original strand, 787788 - 787816
Alignment:
Q  453 aagataaaataaagttaaattgttttcat 481  Q
    |||||||||||||||||||||||||||||    
T  787788 aagataaaataaagttaaattgttttcat 787816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 473
Target Start/End: Original strand, 31461325 - 31461423
Alignment:
Q  375 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaatt 473  Q
    |||||||| ||||||||| | ||| || |||||| || ||||||||||||||||| ||| ||| ||||||||    ||||||||||||||||| |||||    
T  31461325 gataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaaatt 31461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 477
Target Start/End: Complemental strand, 33197426 - 33197320
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 470  Q
    |||||||||||| || |||||||| |||||| |||||| | |||||||||||||| |||  || ||| ||||||||    |||||||| |||||||| ||    
T  33197426 tttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtcaa 33197327  T
Q  471 attgttt 477  Q
     ||||||    
T  33197326 gttgttt 33197320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 482
Target Start/End: Complemental strand, 32633765 - 32633693
Alignment:
Q  409 tgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    |||||||||||||| ||||||||||  |||||||||||  | |||||||||| |||| | ||||||||||||||    
T  32633765 tgtttatcatataattggttacatatgagttatttctatag-aaaagataaactaaaatcaaattgttttcata 32633693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 482
Target Start/End: Complemental strand, 11393553 - 11393441
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 470  Q
    |||||||||||| ||||||||| | |||||| || || ||||||||||||||||| |||  || ||| ||||||||    |||||||| |||||| | ||    
T  11393553 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaa 11393454  T
Q  471 att-gttttcata 482  Q
    ||| |||||||||    
T  11393453 attcgttttcata 11393441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 482
Target Start/End: Complemental strand, 11410214 - 11410102
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 470  Q
    |||||||||||| ||||||||| | |||||| || || ||||||||||||||||| |||  || ||| ||||||||    |||||||| |||||| | ||    
T  11410214 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaa 11410115  T
Q  471 att-gttttcata 482  Q
    ||| |||||||||    
T  11410114 attcgttttcata 11410102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 482
Target Start/End: Complemental strand, 28803661 - 28803582
Alignment:
Q  403 cataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    |||||||| |||||||||||||| ||| ||| |||||||||| |    ||||||||||||||||| ||| || |||||||    
T  28803661 cataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcata 28803582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 478
Target Start/End: Original strand, 42457899 - 42457938
Alignment:
Q  439 tatttctagcgtaaaagataaaataaagttaaattgtttt 478  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  42457899 tatttctatagtaaaagataaaataaagttaaattgtttt 42457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Complemental strand, 3227769 - 3227731
Alignment:
Q  450 taaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  3227769 taaaaaataaaacaaagttaaattgttttcataagctat 3227731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 482
Target Start/End: Original strand, 10150679 - 10150749
Alignment:
Q  412 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    |||| ||||||||| |||  || ||||||||||||   ||||||||||||||| ||||||| |||||||||    
T  10150679 ttattatataagtgtttatgtataagttatttctataataaaagataaaataacgttaaatggttttcata 10150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 31228966 - 31228893
Alignment:
Q  411 tttatcatataagtggttacatacaagttatttcta--gcgtaaaagataaaataaagttaaattgttttcata 482  Q
    |||||||||||||||||||   ||| ||||||||||  ||  ||||||||||||||||  ||||||||||||||    
T  31228966 tttatcatataagtggttatgcacatgttatttctatagctcaaaagataaaataaaggcaaattgttttcata 31228893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 482
Target Start/End: Original strand, 3673728 - 3673801
Alignment:
Q  409 tgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    ||||| ||||||||||| |||  ||  |||||||||||    |||| |||||||||||||||||||||||||||    
T  3673728 tgtttgtcatataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcata 3673801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 750460 - 750496
Alignment:
Q  452 aaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  750460 aaagataaaataatgttaaattgtcttcataagctat 750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 467
Target Start/End: Original strand, 3102576 - 3102672
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 467  Q
    |||||||||||| ||| ||||| | |||| | |||||||||||||||||||| || |||  || ||| ||||| ||  | |||| ||||||||||||    
T  3102576 tttggataaacagctttattaagcgcttaaaacataaatgtttatcatataactgcttatgtataagctatttttatagcaaaatataaaataaagt 3102672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 482
Target Start/End: Complemental strand, 9202935 - 9202824
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcat-ataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 469  Q
    ||||||||||||||||| ||  |  |||||| || || |||||||||| ||||||| ||| ||| ||| |||||||   | |||||||||||||||||||    
T  9202935 tttggataaacatcttatttgca-gcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctgtagcaaaagataaaataaagtta 9202837  T
Q  470 aattgttttcata 482  Q
    |||||||||||||    
T  9202836 aattgttttcata 9202824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Complemental strand, 12595847 - 12595816
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||||||||||||||||||||||    
T  12595847 aaaagataaaataaagttaaattgttttcata 12595816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 481
Target Start/End: Original strand, 10363713 - 10363743
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcat 481  Q
    |||||||||||||||||||||||||||||||    
T  10363713 aaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 479
Target Start/End: Original strand, 12425532 - 12425562
Alignment:
Q  449 gtaaaagataaaataaagttaaattgttttc 479  Q
    |||||||||||||||||||||||||||||||    
T  12425532 gtaaaagataaaataaagttaaattgttttc 12425562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 26516181 - 26516275
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaa 465  Q
    |||||||||||| ||||||||| | |||||| |||||  | |||||||||||||| |||  || ||| ||||||||    |||||||||||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 12242795 - 12242758
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  12242795 aaaagataaaatagagtcaaattgttttcataagctat 12242758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Original strand, 11835240 - 11835268
Alignment:
Q  451 aaaagataaaataaagttaaattgttttc 479  Q
    |||||||||||||||||||||||||||||    
T  11835240 aaaagataaaataaagttaaattgttttc 11835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 482
Target Start/End: Complemental strand, 35135846 - 35135738
Alignment:
Q  374 ggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaatt 473  Q
    ||||||||| ||||||| ||| || ||| ||||| || ||| |||||||||| |||  || ||| ||||||||    ||||||||||||||||| ||| |    
T  35135846 ggataaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaact 35135747  T
Q  474 gttttcata 482  Q
     ||||||||    
T  35135746 attttcata 35135738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 488
Target Start/End: Complemental strand, 37611364 - 37611263
Alignment:
Q  385 ttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataag 484  Q
    |||||||| | |||||| |||||||| || ||||||||||| |||  || ||| ||||||||   ||||||  ||||| || | ||||||||||||||||    
T  37611364 ttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataataaaag--aaaatcaaatcaaattgttttcataag 37611267  T
Q  485 ctat 488  Q
    ||||    
T  37611266 ctat 37611263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 488
Target Start/End: Complemental strand, 37788094 - 37787993
Alignment:
Q  385 ttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataag 484  Q
    |||||||| | |||||| |||||||| || ||||||||||| |||  || ||| ||||||||   ||||||  ||||| || | ||||||||||||||||    
T  37788094 ttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataataaaag--aaaatcaaatcaaattgttttcataag 37787997  T
Q  485 ctat 488  Q
    ||||    
T  37787996 ctat 37787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 17269133 - 17269244
Alignment:
Q  370 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 469  Q
    |||||||||| || ||| ||||||  || |||||||||| |||| ||||||||||| |||  || |||||||||||||   |||||  |||||||||| |    
T  17269133 atttggataagcaacttgattaaatactgatatcataaacgttt-tcatataagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtca 17269231  T
Q  470 aattgttttcata 482  Q
    |||||||||||||    
T  17269232 aattgttttcata 17269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 483
Target Start/End: Original strand, 45234112 - 45234192
Alignment:
Q  403 cataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataa 483  Q
    |||||||||||||||||| |||| ||   |||| ||||||||||   |||||||||||||||||| ||||| |||||||||    
T  45234112 cataaatgtttatcatatgagtgcttttgtacatgttatttctataataaaagataaaataaagtcaaattattttcataa 45234192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 14737812 - 14737775
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14737812 aaaagataaaataaagtcaaattgttttcataagctat 14737775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 48748690 - 48748653
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  48748690 aaaagatgaaataaagttaaattgttttcataagctat 48748653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 482
Target Start/End: Original strand, 11211060 - 11211112
Alignment:
Q  430 catacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    |||| |||||||||||||   ||||||||||||||||||||||| ||||||||    
T  11211060 catataagttatttctagaacaaaagataaaataaagttaaatttttttcata 11211112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 21516256 - 21516300
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttat 415  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  21516256 tttggataaacaacttaattaaacgcttataacataaatgtttat 21516300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 15477530 - 15477568
Alignment:
Q  440 atttctagcgtaaaagataaaataaagttaaattgtttt 478  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  15477530 atttctatagtaaaagataaaataaagttaaattgtttt 15477568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 24153164 - 24153214
Alignment:
Q  375 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 425  Q
    |||||||| ||||||||||| |||||| |||| ||||||||||||| ||||    
T  24153164 gataaacaacttaattaaacacttataacatatatgtttatcatatgagtg 24153214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 50319255 - 50319292
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319255 aaaagataaaataaagtcaagttgttttcataagctat 50319292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 37236 - 37280
Alignment:
Q  375 gataaacatcttaattaaacccttatatcataaatgtttatcata 419  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  37236 gataaacagcttaattaaatgcttataacataaatgtttatcata 37280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 478
Target Start/End: Original strand, 8081849 - 8081877
Alignment:
Q  450 taaaagataaaataaagttaaattgtttt 478  Q
    |||||||||||||||||||||||||||||    
T  8081849 taaaagataaaataaagttaaattgtttt 8081877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 29834985 - 29834953
Alignment:
Q  456 ataaaataaagttaaattgttttcataagctat 488  Q
    |||||||||||| ||||||||||||||||||||    
T  29834985 ataaaataaagtcaaattgttttcataagctat 29834953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 36602687 - 36602727
Alignment:
Q  385 ttaattaaacccttatatcataaatgtttatcatataagtg 425  Q
    |||||||| | |||||||||||||| |||||||||||||||    
T  36602687 ttaattaagcacttatatcataaatttttatcatataagtg 36602727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 478
Target Start/End: Complemental strand, 47002982 - 47002954
Alignment:
Q  450 taaaagataaaataaagttaaattgtttt 478  Q
    |||||||||||||||||||||||||||||    
T  47002982 taaaagataaaataaagttaaattgtttt 47002954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 27459 - 27570
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 470  Q
    |||||||||||| ||||| ||||| |||||| |||||    ||||||| |||||| |||  || ||||||||||||    | ||||||||||||||| ||    
T  27459 tttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaa 27558  T
Q  471 attgttttcata 482  Q
    ||||||||||||    
T  27559 attgttttcata 27570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Complemental strand, 21385 - 21357
Alignment:
Q  451 aaaagataaaataaagttaaattgttttc 479  Q
    |||||||||||||||||||||||||||||    
T  21385 aaaagataaaataaagttaaattgttttc 21357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 6552456 - 6552365
Alignment:
Q  372 ttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaata 463  Q
    |||||||| || ||||||||||| |||| ||||||| |  |||||||||||||| |||  |||||||||||||||    |||||||||||||    
T  6552456 ttggataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 477
Target Start/End: Complemental strand, 21853256 - 21853197
Alignment:
Q  418 tataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttt 477  Q
    |||||||| ||| ||| ||||||||||||    |||||||||||||||||||||||||||    
T  21853256 tataagtgattatatataagttatttctattacaaaagataaaataaagttaaattgttt 21853197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 5630102 - 5630049
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagt 424  Q
    |||||||||||| |||||||||  |||||||  |||| ||||||||||||||||    
T  5630102 tttggataaacaacttaattaagtccttatagaataagtgtttatcatataagt 5630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 7244625 - 7244702
Alignment:
Q  411 tttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||||||| |||  || ||| ||||||||    ||||||||||| ||||| ||| ||||||||||||||||    
T  7244625 tttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcataagctat 7244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 34035902 - 34035939
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  34035902 aaaaaataatataaagttaaattgttttcataagctat 34035939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 8680878 - 8680926
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcata 419  Q
    |||||||||||| || |||||||| |||||| |||| ||||||||||||    
T  8680878 tttggataaacagctcaattaaacacttatagcatagatgtttatcata 8680926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Original strand, 30180014 - 30180042
Alignment:
Q  451 aaaagataaaataaagttaaattgttttc 479  Q
    |||||||||||||||||||||||||||||    
T  30180014 aaaagataaaataaagttaaattgttttc 30180042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 33601215 - 33601163
Alignment:
Q  436 agttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 488  Q
    |||||||||||   ||||| |||||||||||| ||| ||||||||||||||||    
T  33601215 agttatttctacactaaaaaataaaataaagtcaaactgttttcataagctat 33601163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 10728579 - 10728626
Alignment:
Q  435 aagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||    
T  10728579 aagttatttctaaagcaaaagataaaataaagttaaattgttttcata 10728626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 482
Target Start/End: Complemental strand, 10749389 - 10749304
Alignment:
Q  396 cttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||  ||||||||||||||  ||||  || |||| |||||||   |||||||||||||||||||||||| ||||||||    
T  10749389 cttatatcataagcgtttatcatataagatgttatgtataagt-atttctataataaaagataaaataaagttaaattattttcata 10749304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 467
Target Start/End: Original strand, 5328857 - 5328953
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 467  Q
    |||| ||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||| |  ||||||||||||    |||||||||||||||||    
T  5328857 tttgaataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagt 5328953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 483
Target Start/End: Complemental strand, 6078475 - 6078364
Alignment:
Q  372 ttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaa 471  Q
    ||||||||||| ||||||||| |  ||||| |||||  | |||||||| | |||||||| ||  || |||||||| |  | ||| ||||||||||| |||    
T  6078475 ttggataaacaacttaattaagcggttataacataagcgcttatcatacatgtggttacgtatgagctatttctatcacagaaggtaaaataaagtcaaa 6078376  T
Q  472 ttgttttcataa 483  Q
    ||||||||||||    
T  6078375 ttgttttcataa 6078364  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 2205675 - 2205638
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  2205675 aaaagataaaacaaagtcaaattgttttcataagctat 2205638  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 5731555 - 5731592
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagctat 488  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  5731555 aaaagataaaatgaagtcaaattgttttcataagctat 5731592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 479
Target Start/End: Original strand, 264302 - 264362
Alignment:
Q  419 ataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttc 479  Q
    ||||||| ||| ||| ||| ||||||||  | |||||||||||||||||||||| ||||||    
T  264302 ataagtgcttatatataagctatttctaaagcaaaagataaaataaagttaaatcgttttc 264362  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Complemental strand, 9093663 - 9093635
Alignment:
Q  451 aaaagataaaataaagttaaattgttttc 479  Q
    |||||||||||||||||||||||||||||    
T  9093663 aaaagataaaataaagttaaattgttttc 9093635  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 9559664 - 9559620
Alignment:
Q  435 aagttatttctagcgtaaaagataaaataaagttaaattgttttc 479  Q
    ||||||||||||  | ||||||||||||||| |||||||||||||    
T  9559664 aagttatttctatagcaaaagataaaataaatttaaattgttttc 9559620  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 467
Target Start/End: Original strand, 54775011 - 54775107
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 467  Q
    |||| ||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||| |  ||||||||||||    |||||||||||||||||    
T  54775011 tttgaataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagt 54775107  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 849609 - 849652
Alignment:
Q  435 aagttatttctagcgtaaaagataaaataaagttaaattgtttt 478  Q
    |||| ||||||| || ||||||||||||||||||||||||||||    
T  849609 aagtcatttctatcggaaaagataaaataaagttaaattgtttt 849652  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Complemental strand, 10101583 - 10101552
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||||||||||||||||||||||    
T  10101583 aaaagataaaataaagttaaattgttttcata 10101552  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Complemental strand, 10212508 - 10212477
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||||||||||||||||||||||    
T  10212508 aaaagataaaataaagttaaattgttttcata 10212477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Complemental strand, 15304454 - 15304423
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcata 482  Q
    ||||||||||||||||||||||||||||||||    
T  15304454 aaaagataaaataaagttaaattgttttcata 15304423  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 482
Target Start/End: Complemental strand, 3182508 - 3182438
Alignment:
Q  412 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    ||||||| |||||| |||  || |||||| |||||  | ||||||||||||||||| ||||||||||||||    
T  3182508 ttatcatttaagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcata 3182438  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 20874487 - 20874433
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 425  Q
    |||||||||||| ||||||||| | |||||| ||||||||  |||||||||||||    
T  20874487 tttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg 20874433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 16790249 - 16790181
Alignment:
Q  397 ttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaa 465  Q
    ||||| |||||  |||||||||||||||| ||| ||| ||||||||||||    |||||||||||||||    
T  16790249 ttatagcataagcgtttatcatataagtgcttatatataagttatttctataacaaaagataaaataaa 16790181  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 467
Target Start/End: Complemental strand, 1259 - 1165
Alignment:
Q  373 tggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 467  Q
    |||||||||| |||||||||   |||||| |||||| || ||||||||||||| |||  || ||| ||||||||    |||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 1165  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 467
Target Start/End: Original strand, 2716 - 2810
Alignment:
Q  373 tggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 467  Q
    |||||||||| |||||||||   |||||| |||||| || ||||||||||||| |||  || ||| ||||||||    |||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 2810  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 4684296 - 4684243
Alignment:
Q  371 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagt 424  Q
    |||||||||| | ||||||||| | ||| |||||||| ||||||||||||||||    
T  4684296 tttggataaatagcttaattaagcacttctatcataagtgtttatcatataagt 4684243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 49803158 - 49803203
Alignment:
Q  435 aagttatttctagcgtaaaagataaaataaagttaaattgttttca 480  Q
    ||||||||||||  | |||||||||||| |||||||||||||||||    
T  49803158 aagttatttctatagcaaaagataaaatgaagttaaattgttttca 49803203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 479
Target Start/End: Original strand, 25885822 - 25885850
Alignment:
Q  451 aaaagataaaataaagttaaattgttttc 479  Q
    |||||||||||||||||||||||||||||    
T  25885822 aaaagataaaataaagttaaattgttttc 25885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 30024622 - 30024694
Alignment:
Q  410 gtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 482  Q
    |||||||||||||||  |||   | ||||||||||||    ||||||||||||||||| ||||||||||||||    
T  30024622 gtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcata 30024694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 43505919 - 43505955
Alignment:
Q  451 aaaagataaaataaagttaaattgttttcataagcta 487  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  43505919 aaaagataaaataacgttaaattgtttttataagcta 43505955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 52294072 - 52294036
Alignment:
Q  452 aaagataaaataaagttaaattgttttcataagctat 488  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  52294072 aaagataaaataaagtgaaattgttttcataaactat 52294036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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