View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18602_low_6 (Length: 505)

Name: NF18602_low_6
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18602_low_6
NF18602_low_6
[»] chr1 (6 HSPs)
chr1 (114-441)||(26472352-26472678)
chr1 (53-426)||(16572586-16572963)
chr1 (160-271)||(10683499-10683610)
chr1 (433-489)||(26472122-26472178)
chr1 (223-379)||(25144318-25144476)
chr1 (159-220)||(18350305-18350367)
[»] chr3 (1 HSPs)
chr3 (17-220)||(28244790-28244992)
[»] chr4 (1 HSPs)
chr4 (159-280)||(9959522-9959643)
[»] scaffold0655 (1 HSPs)
scaffold0655 (422-485)||(1038-1101)
[»] chr2 (6 HSPs)
chr2 (166-258)||(18682338-18682430)
chr2 (159-271)||(34181187-34181299)
chr2 (159-217)||(31450523-31450581)
chr2 (159-215)||(22114919-22114975)
chr2 (159-220)||(28414414-28414475)
chr2 (173-214)||(34723909-34723950)
[»] chr7 (2 HSPs)
chr7 (181-271)||(39249633-39249723)
chr7 (366-461)||(16984615-16984710)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 114 - 441
Target Start/End: Complemental strand, 26472678 - 26472352
Alignment:
Q  114 tcaaggaggaggaagataaaggtttctcccaactttctcccttgagagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaa 213  Q
    |||| |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  26472678 tcaatgaggaggaagatag-ggtttctcccaactttcttccttgagagtatgttttgtatttatttcttgtttatgatttatgttgccatgagaaactaa 26472580  T
Q  214 actccctacgattaggcttcgaagattaacctctgtttatttgttggaattaattaatatagtctttcttcgattatgatttaagttcttattttatttt 313  Q
    |||||||| ||||||| ||| ||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  26472579 actccctatgattaggtttctaagattaacctttgtttatttgttgaaattaattaatgtagtcttttttcgattatgatttaagttcttattttatttt 26472480  T
Q  314 caattgttccgatcgttgtaatgcttatggacctttaagcacaaataagccataattgtatctattgcatagtttaggcagaaataaacacctagggata 413  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  26472479 cagttgttccgatcgttgtaatgcttatggacctttaagcacaaataagccataattgtatctattgcaaagtttgggcagaaataaacacctaaggata 26472380  T
Q  414 tcatgtatgatctctaggttttagtaaa 441  Q
    ||||||||||||||||||||||||||||    
T  26472379 tcatgtatgatctctaggttttagtaaa 26472352  T

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Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 53 - 426
Target Start/End: Complemental strand, 16572963 - 16572586
Alignment:
Q  53 aaacactttattcattcagaaatcagacgatgcaaggtg--aaggcatggagcaaggctatcgtcaaggaggaggaagataaaggtttctcccaactttc 150  Q
    |||||||||||||||||| ||| |||| | |||||||||  |||||| |||| | | ||||| ||||||| ||||||||||  ||||||  |||| ||||    
T  16572963 aaacactttattcattcataaaccagatggtgcaaggtgtgaaggcaaggagtaggtctatcatcaaggatgaggaagatat-ggtttcatccaattttc 16572865  T
Q  151 tcccttgagagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactccctacgattaggcttcgaagattaacctctgtt 250  Q
    |||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||| |||  ||||||| ||| ||||| || || ||||    
T  16572864 tccctttagagtatgttttgtaattctttcttgtttatgttttctattgccatgagcaagtaaacttcctctgattaggattctaagatgaaactttgtt 16572765  T
Q  251 tatttgttggaattaattaatata--gtctttcttcgattatgatttaag-ttcttattttattttcaattgttccgatcgttgtaatgcttatggacct 347  Q
    |||||||| ||||| |||||| ||   ||||| |||  |||||||||||| |||||| ||||||||||||| ||| | | || |||||| || | |||||    
T  16572764 tatttgttcgaattcattaatgtaatttctttattcagttatgatttaagtttctta-tttattttcaatttttctggttgtagtaatgtttcttgacct 16572666  T
Q  348 ttaagcacaaataagccataattgtatctattgcat-agtttaggcagaaataaacacctagggatatcatgtatgatct 426  Q
    ||| ||||||||||||||||||||||||||||| || | |||| ||| |||||| ||| || || |||||||||||||||    
T  16572665 ttaggcacaaataagccataattgtatctattgtataactttatgcaaaaataagcacatatggctatcatgtatgatct 16572586  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 10683499 - 10683610
Alignment:
Q  160 agtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactccctacgattaggcttcgaagattaacctctgtttatttgttg 259  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||| ||||  ||||| | ||| ||||| ||||| |||||||||||||    
T  10683499 agtatgttttgtatttctttcttgtttagattttatgttgccaagagcaaccaaacaccctctgattaaggttctaagatgaacctttgtttatttgttg 10683598  T
Q  260 gaattaattaat 271  Q
    ||||| ||||||    
T  10683599 gaatttattaat 10683610  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 433 - 489
Target Start/End: Complemental strand, 26472178 - 26472122
Alignment:
Q  433 tttagtaaaaggctaacttaccttgctttaattcaaacaagaactataattgagaat 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26472178 tttagtaaaaggctaacttaccttgctttaattcaaacaagaactataattgagaat 26472122  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 25144318 - 25144476
Alignment:
Q  223 gattaggcttcgaagattaacctctgtttatttgttggaattaattaatatagt--ctttcttcgattatgatttaagttcttattttattttcaattgt 320  Q
    ||||||||||||||||  ||||||| || ||||||||||||| | |||   | |  |||| | ||||||| |||| |  |||||| ||||||||||||||    
T  25144318 gattaggcttcgaagacaaacctctattaatttgttggaattcaataacgcaatttctttatacgattataattttaagtcttatattattttcaattgt 25144417  T
Q  321 tccgatcgttgtaatgcttatggacctttaagcacaaataagccataattgtatctatt 379  Q
    || |||||||||||||||| ||||||  |  ||||||||||||| ||||||||||||||    
T  25144418 tctgatcgttgtaatgcttctggacccattggcacaaataagccctaattgtatctatt 25144476  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 18350305 - 18350367
Alignment:
Q  159 gagtatgttttgtatttctttcttgtttatgtttta-tgttgccatgagcaactaaactccct 220  Q
    |||||||||| |||||| |||||| ||||||||||| | || |||||||||||||||| ||||    
T  18350305 gagtatgtttagtatttatttcttttttatgttttactcttaccatgagcaactaaacaccct 18350367  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 28244790 - 28244992
Alignment:
Q  17 tagttctaaacttgcttatatagagaaaccacttgaaaacactttattcattcagaaatcagacgatgcaaggtgaaggcatggagcaaggctatcgtca 116  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||| ||||||| ||||   |||| |||| |||||||||| |||||||||||||| |||    
T  28244790 tagttctaaacttacttatatagagagaccccttgcaaacactttcttcattccgaaactggacggtgcatggtgaaggcaaggagcaaggctatcatca 28244889  T
Q  117 aggaggaggaagataaaggtttctcccaactttctcccttgagagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaact 216  Q
    |||| ||||||| | | |||||||||||| ||||| |||| | ||||||||||||| |||||||||||||||  |||   ||| | ||||||||||||||    
T  28244890 aggatgaggaagct-agggtttctcccaattttcttccttcaaagtatgttttgtaattctttcttgtttataatttccattgtcgtgagcaactaaact 28244988  T
Q  217 ccct 220  Q
    ||||    
T  28244989 ccct 28244992  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 9959522 - 9959643
Alignment:
Q  159 gagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactccctacgattaggcttcgaagattaacctctgtttatttgtt 258  Q
    |||||||||||||| ||  ||||||||||||| ||| ||||||||||  ||||||||||| |  |||||   ||| ||| | || |||| ||||||||||    
T  9959522 gagtatgttttgtagtttattcttgtttatgtcttaagttgccatgaaaaactaaactccatgtgattacagttctaagttgaatctctatttatttgtt 9959621  T
Q  259 ggaattaattaatatagtcttt 280  Q
    ||||| |||||||||| |||||    
T  9959622 ggaatcaattaatataatcttt 9959643  T

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Target: scaffold0655 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 485
Target Start/End: Original strand, 1038 - 1101
Alignment:
Q  422 gatctctaggttttagtaaaaggctaacttaccttgctttaattcaaacaagaactataattga 485  Q
    ||||| ||||||||||||||||||| |||||| ||| |||||||| ||||||||| ||||||||    
T  1038 gatctttaggttttagtaaaaggctgacttacattggtttaattcgaacaagaaccataattga 1101  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 18682430 - 18682338
Alignment:
Q  166 ttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactccctacgattaggcttcgaagattaacctctgtttatttgtt 258  Q
    ||||||| ||||| |||| ||||| ||| ||||| ||||||||||||||| ||||   |||||| ||| ||||| ||||| ||||||||||||    
T  18682430 ttttgtaattcttccttgcttatgctttctgttgacatgagcaactaaacaccctctaattagggttctaagatgaacctttgtttatttgtt 18682338  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 34181187 - 34181299
Alignment:
Q  159 gagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactccctacgattaggcttcgaagattaacctctgtttatttgtt 258  Q
    ||||||||||||||| | | ||||||||||||||| | |||||||  | ||||||| | |||  || |||| ||| ||||| ||| ||| ||||||| ||    
T  34181187 gagtatgttttgtatctttgtcttgtttatgttttctattgccattcgtaactaaaattcctttgagtaggtttctaagatgaacatctatttatttttt 34181286  T
Q  259 ggaattaattaat 271  Q
    |||||||||||||    
T  34181287 ggaattaattaat 34181299  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 31450523 - 31450581
Alignment:
Q  159 gagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactc 217  Q
    ||||||||||| ||| | ||||||||||||||||| | ||| |||||||||||||||||    
T  31450523 gagtatgttttatatctttttcttgtttatgttttctattgtcatgagcaactaaactc 31450581  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 22114975 - 22114919
Alignment:
Q  159 gagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaac 215  Q
    |||||| ||||||||||  |||||||||||||||| ||||||||| ||||| |||||    
T  22114975 gagtatattttgtattttcttcttgtttatgttttctgttgccattagcaattaaac 22114919  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 28414414 - 28414475
Alignment:
Q  159 gagtatgttttgtatttctttcttgtttatgttttatgttgccatgagcaactaaactccct 220  Q
    ||||||||||| || ||  || ||||||||||||| | |||||||||| |||||||||||||    
T  28414414 gagtatgttttataatttattattgtttatgttttttattgccatgagaaactaaactccct 28414475  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34723950 - 34723909
Alignment:
Q  173 tttctttcttgtttatgttttatgttgccatgagcaactaaa 214  Q
    |||||||||||||||||| || |||||||||| |||||||||    
T  34723950 tttctttcttgtttatgtattttgttgccatgggcaactaaa 34723909  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 39249723 - 39249633
Alignment:
Q  181 ttgtttatgttttatgttgccatgagcaactaaactccctacgattaggcttcgaagattaacctctgtttatttgttggaattaattaat 271  Q
    |||||||||| ||  ||| ||||||| |||||||| | ||| ||||||| ||| || || ||||||| ||||||||||||| |||||||||    
T  39249723 ttgtttatgtattcagttaccatgagtaactaaacactctaagattagggttctaaaatgaacctctatttatttgttggatttaattaat 39249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 16984615 - 16984710
Alignment:
Q  366 taattgtatctattgcatagtttaggcagaaataaacacctagggatatcatgtatgatctctaggttttagtaaaaggctaacttaccttgcttt 461  Q
    ||||| ||| ||||||| || |||||||||||||| | | |||||||| | | |||||| | || | |||||||||| ||| ||||||||||||||    
T  16984615 taattatatttattgcaaagcttaggcagaaataagctcatagggataacctatatgatatatatgatttagtaaaaagctgacttaccttgcttt 16984710  T

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