View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18602_low_7 (Length: 489)

Name: NF18602_low_7
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18602_low_7
NF18602_low_7
[»] chr8 (13 HSPs)
chr8 (14-197)||(2982813-2982996)
chr8 (317-468)||(2982511-2982662)
chr8 (355-467)||(2707759-2707871)
chr8 (67-170)||(2991901-2992004)
chr8 (52-197)||(2706500-2706638)
chr8 (352-465)||(3004604-3004717)
chr8 (356-468)||(2709014-2709126)
chr8 (359-467)||(2991581-2991692)
chr8 (346-410)||(3139900-3139964)
chr8 (349-453)||(3168048-3168152)
chr8 (346-410)||(3171533-3171597)
chr8 (348-398)||(2909011-2909061)
chr8 (195-231)||(2982748-2982784)
[»] chr6 (3 HSPs)
chr6 (67-170)||(18358282-18358385)
chr6 (359-398)||(18358071-18358110)
chr6 (432-468)||(18357995-18358031)
[»] chr1 (1 HSPs)
chr1 (316-465)||(10753369-10753518)
[»] chr7 (2 HSPs)
chr7 (347-410)||(7161798-7161861)
chr7 (347-468)||(3916874-3916995)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 2982996 - 2982813
Alignment:
Q  14 atggtatacaagtaacaatattgaaccttttaaatcaatatttatagtcactttttaaaagtttatcaaagaatgaacaaacaaagtttctaaataagtg 113  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  2982996 atggtatacaagtaacaatattgaacttttaaaatcaatatttgtagtcactttttaaaagtttatcagagaataaacaaacaaagtttctaaataagtg 2982897  T
Q  114 gtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagtatttagtcgtgatgcataaatatgattcttt 197  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2982896 gtgtacaaatctaaggaaattcagaaatattaaaatgtctttggtatctcagtatttagtcgtgatgcataaatatgattcttt 2982813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 317 - 468
Target Start/End: Complemental strand, 2982662 - 2982511
Alignment:
Q  317 tcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgag 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2982662 tcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacattgttgag 2982563  T
Q  417 ctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacgtgg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2982562 ctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacgtgg 2982511  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 355 - 467
Target Start/End: Original strand, 2707759 - 2707871
Alignment:
Q  355 tatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgtaag 454  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  | |  ||||| ||||||   | ||||||||||||||||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaactattgatttctaaggtatgtaag 2707858  T
Q  455 tttgtaagacgtg 467  Q
    |||||||||||||    
T  2707859 tttgtaagacgtg 2707871  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 2992004 - 2991901
Alignment:
Q  67 tttaaaagtttatcaaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagt 166  Q
    |||||||  |||| ||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||||    
T  2992004 tttaaaatgttattaaagaataaacaaccaaagttcctaaataagtggtgtacaaaactatggaaattcagaaatattaaaaagtctttgacatctcagt 2991905  T
Q  167 attt 170  Q
    ||||    
T  2991904 attt 2991901  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 2706500 - 2706638
Alignment:
Q  52 tatttatagtcactttttaaaagtttatcaaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgt 151  Q
    |||||||||| | |||||| || ||||||||||||||||||| |||||||  ||||||||||||    ||||||| ||||||||||||||||||||| ||    
T  2706500 tatttatagtaaatttttacaattttatcaaagaatgaacaaccaaagttcttaaataagtggt----aaaactatggaaattcagaaatattaaaaagt 2706595  T
Q  152 ctttggtatctcagtatttagtcgtgatgcataaatatgattcttt 197  Q
    ||||||||  |||| | ||||||| ||||||| |||||||||||||    
T  2706596 ctttggta--tcag-aattagtcgcgatgcatgaatatgattcttt 2706638  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 465
Target Start/End: Complemental strand, 3004717 - 3004604
Alignment:
Q  352 gattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgt 451  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | |||| | |||||||| ||||| |||||||||   |    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtctggcattcttcaactaaaagtggacatttaatgaattctaaggtgcat 3004618  T
Q  452 aagtttgtaagacg 465  Q
    ||||| ||||||||    
T  3004617 aagttagtaagacg 3004604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 2709014 - 2709126
Alignment:
Q  356 atgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggtatgtaagt 455  Q
    |||||||||||||||||||||||||| |||||| |||||| |||| |||||||||  | |  ||||| ||||||| |||||||||||||||||||||| |    
T  2709014 atgtttgggatgtgagcaattttagagcaagttacacttgcttctctctgacattcgtcaattaagagtggacatccaatgatttctaaggtatgtaatt 2709113  T
Q  456 ttgtaagacgtgg 468  Q
    ||||||| |||||    
T  2709114 ttgtaaggcgtgg 2709126  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 2991692 - 2991581
Alignment:
Q  359 tttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgag---ctaagaatggacattcaatgatttctaaggtatgtaagt 455  Q
    |||||||||||||||||||||||||||  ||||| |||||||||| |  |||  | ||   |||||| || |||| |||||||||||||||| |||||||    
T  2991692 tttgggatgtgagcaattttagaccaaagtgcacctgtttctgtcaggaattcattagtatctaagattgaacatccaatgatttctaaggtgtgtaagt 2991593  T
Q  456 ttgtaagacgtg 467  Q
    ||||||||||||    
T  2991592 ttgtaagacgtg 2991581  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 3139900 - 3139964
Alignment:
Q  346 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 410  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||| |||||    
T  3139900 ttttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacatt 3139964  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 3168048 - 3168152
Alignment:
Q  349 taagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaaggta 448  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||  ||||| || | ||||||  |||||| ||| |||||| | ||||    
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggta 3168147  T
Q  449 tgtaa 453  Q
    |||||    
T  3168148 tgtaa 3168152  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 3171533 - 3171597
Alignment:
Q  346 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 410  Q
    |||||||||||||||||| |||||||||||||| | ||| ||||||||||||| ||||| |||||    
T  3171533 ttttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacatt 3171597  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 2909011 - 2909061
Alignment:
Q  348 ttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgttt 398  Q
    ||||||||||||||||||||||||||| ||| | |||||| ||| ||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgttt 2909061  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 2982784 - 2982748
Alignment:
Q  195 ttttgcccagccatatgcattcaaacaatgagtgaag 231  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  2982784 tttttcccagccatatgcattcaaacaatgagcgaag 2982748  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 18358385 - 18358282
Alignment:
Q  67 tttaaaagtttatcaaagaatgaacaaacaaagtttctaaataagtggtgtacaaaactaaggaaattcagaaatattaaaatgtctttggtatctcagt 166  Q
    |||||||  |||| ||||||| ||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||  ||||||||    
T  18358385 tttaaaatgttattaaagaataaacaaccaaagttcctaaataagtggtgtacaaaactatggatattcagaaatattaaaaagtctttgacatctcagt 18358286  T
Q  167 attt 170  Q
    ||||    
T  18358285 attt 18358282  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 18358110 - 18358071
Alignment:
Q  359 tttgggatgtgagcaattttagaccaagttgcacttgttt 398  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18358110 tttgggatgtgagcaattttagaccaagttgcacctgttt 18358071  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 18358031 - 18357995
Alignment:
Q  432 caatgatttctaaggtatgtaagtttgtaagacgtgg 468  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18358031 caatgatttctaaggtgtgtaagtttgtaagacgtgg 18357995  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 465
Target Start/End: Original strand, 10753369 - 10753518
Alignment:
Q  316 gtcggtacctttctaatcccaaagactttcttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttga 415  Q
    |||||||||||||| || ||||  |  || || ||||| |||||||||||||||||| ||||||| ||  ||||||||||||||| ||  |||||  | |    
T  10753369 gtcggtacctttctcatgccaataaaatttttgtaagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctca 10753468  T
Q  416 gctaagaatggacattcaatgatttctaaggtatgtaagtttgtaagacg 465  Q
      ||||| |||||||||||||||||||||||| | |||||| ||||||||    
T  10753469 attaagagtggacattcaatgatttctaaggtttttaagttggtaagacg 10753518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 7161861 - 7161798
Alignment:
Q  347 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacatt 410  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||| |||||    
T  7161861 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcacatt 7161798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 468
Target Start/End: Original strand, 3916874 - 3916995
Alignment:
Q  347 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctgacattgttgagctaagaatggacattcaatgatttctaagg 446  Q
    ||||||||||||||||||||||||| ||||||   ||| ||||||||||||| ||||| ||||| || |  |||||  ||||||  ||||||||||| ||    
T  3916874 tttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttctaggg 3916973  T
Q  447 tatgtaagtttgtaagacgtgg 468  Q
    | ||||| || | |||||||||    
T  3916974 tctgtaatttggcaagacgtgg 3916995  T

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