View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18602_low_8 (Length: 480)

Name: NF18602_low_8
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18602_low_8
NF18602_low_8
[»] chr6 (9 HSPs)
chr6 (185-465)||(29364027-29364307)
chr6 (22-151)||(29362742-29362871)
chr6 (365-465)||(29353869-29353970)
chr6 (57-111)||(24270233-24270287)
chr6 (323-422)||(29879886-29879980)
chr6 (151-192)||(29362910-29362951)
chr6 (61-104)||(29351712-29351755)
chr6 (190-285)||(29353713-29353809)
chr6 (108-140)||(29915444-29915476)
[»] chr5 (3 HSPs)
chr5 (305-451)||(27754195-27754335)
chr5 (55-140)||(27753866-27753946)
chr5 (163-228)||(27754121-27754192)
[»] chr7 (1 HSPs)
chr7 (192-257)||(29358638-29358703)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 185 - 465
Target Start/End: Original strand, 29364027 - 29364307
Alignment:
Q  185 atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaacacacat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29364027 atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcatcaacacacat 29364126  T
Q  285 acaccctttactatcaacccagaaattcaaatcaaacattctctctcattttgacaaaaactcaaacttcatatcgatcgatcataaaagtaatatcatc 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29364127 acaccctttactatcaacccagaaattcaaatcaaacattctctctcattttgacaaaaactcaaacctcatatcgatcgatcataaaagtaatatcatc 29364226  T
Q  385 catgcaatttacactcctgttatcagtggaatatctatttacaatcccaataacgtgatttcagaaacagtggcttgtaac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364227 catgcaatttacactcctgttatcagtggaatatctatttacaatcccaataacgtgatttcagaaacagtggcttgtaac 29364307  T

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Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 29362742 - 29362871
Alignment:
Q  22 ataaacaaatacttgctgcaaaaatgttttctatatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  29362742 ataaacaaatacttgctgcaaaaatgttttctatatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttctaggcac 29362841  T
Q  122 atgaacatagagttattgtccattaaccac 151  Q
    ||||||||||||||||||||||||||||||    
T  29362842 atgaacatagagttattgtccattaaccac 29362871  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 365 - 465
Target Start/End: Original strand, 29353869 - 29353970
Alignment:
Q  365 atcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctat-ttacaatcccaataacgtgatttcagaaacagtggcttgta 463  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||| ||||||  |||||||||||||||||||| |||    
T  29353869 atcataaaactaatatcatccatgcaatttacacacctgttataagtggaatatctatcgtacaatcacaataatatgatttcagaaacagtggctagta 29353968  T
Q  464 ac 465  Q
    ||    
T  29353969 ac 29353970  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 24270233 - 24270287
Alignment:
Q  57 tacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatg 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24270233 tacacaaatgtgctgcaaatatatagaaaagcatagtattctatacataaatatg 24270287  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 29879980 - 29879886
Alignment:
Q  323 ttctctctcattttgacaaaaactcaaacttcatatcgatcgatcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctat 422  Q
    |||| |||||||||| |||||| |||| ||||||||| |||    ||||| |||||||| |||||||||||||||| |||||||| ||| ||||||||||    
T  29879980 ttctgtctcattttgccaaaaattcaagcttcatatcaatc----ataaatgtaatatcgtccatgcaatttacacacctgttataagt-gaatatctat 29879886  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 29362910 - 29362951
Alignment:
Q  151 caactcatagaactaagagattcgttattactgaatcatcaa 192  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  29362910 caactcatagaacttagagattcgttattactgaatcatcaa 29362951  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 29351712 - 29351755
Alignment:
Q  61 caaatgtgctgcaaatatacagaaaagcatagtattctatacat 104  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  29351712 caaatgtgctgcaaatatatagaaaaacatagtattctttacat 29351755  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 29353713 - 29353809
Alignment:
Q  190 caaaacaaaaagaattcaactttttctctcttatttcc--gaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaacacacata 285  Q
    |||||| |||||||||| |||||||||||| | |||||   |||||||| |||||||| |||||||| | || ||||||| | || ||||||||||||    
T  29353713 caaaacgaaaagaattcgactttttctctcct-tttccaaaaaaaaatcgactttcttcctcaacaactactaggtaattatatcatcaacacacata 29353809  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 29915476 - 29915444
Alignment:
Q  108 tatgttgcaggcacatgaacatagagttattgt 140  Q
    |||||| ||||||||||||||||||||||||||    
T  29915476 tatgttacaggcacatgaacatagagttattgt 29915444  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 305 - 451
Target Start/End: Original strand, 27754195 - 27754335
Alignment:
Q  305 agaaattcaaatcaaacattctctctcattttgacaaaaactcaaacttcatatcgatcgatcataaaagtaatatcatccatgcaatttacactcctgt 404  Q
    ||||| ||||||||| | ||||||||||||||||| ||||||||| ||||||     ||||||||||||| ||||||||||||||||||||||||||||     
T  27754195 agaaactcaaatcaa-ctttctctctcattttgac-aaaactcaagcttcat----gtcgatcataaaagcaatatcatccatgcaatttacactcctgc 27754288  T
Q  405 tatcagtggaatatctatttacaatcccaataacgtgatttcagaaa 451  Q
    ||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  27754289 tataagtagaatatctatatacaatcccaataacgtgatttcagaaa 27754335  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 27753866 - 27753946
Alignment:
Q  55 tatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgt 140  Q
    ||||||||||| ||||||||||||| ||||     ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27753866 tatacacaaatatgctgcaaatataaagaa-----tagtattctatacataaatatgttgtaggcacatgaacatagagttattgt 27753946  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 27754121 - 27754192
Alignment:
Q  163 ctaagagattcgttattactgaatcatc------aaaacaaaaagaattcaactttttctctcttatttccg 228  Q
    ||||||||||| |||||| |||||||||      ||||||||||||||||||||||||||||||||||||||    
T  27754121 ctaagagattcattattattgaatcatcgaaacaaaaacaaaaagaattcaactttttctctcttatttccg 27754192  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 29358703 - 29358638
Alignment:
Q  192 aaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattg 257  Q
    ||||||||||||||||||||| |||||| | ||||| ||||| | |||||||| ||||||||||||    
T  29358703 aaacaaaaagaattcaactttctctctcctttttccaaaaaactaaactttctctctcaacaattg 29358638  T

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