View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18602_low_9 (Length: 453)
Name: NF18602_low_9
Description: NF18602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18602_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 51445388 - 51444958
Alignment:
| Q |
19 |
agttacaaccggatcggttgcgaaattgaggtgcatattgaacaatttcctatacataatgatactaacaaagtaacagtttaattcaatgaagttagag |
118 |
Q |
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| T |
51445388 |
agttacaaccgaatcagttccgaaattgaggtgcatattgaacaatttcctatacataatgatactaacaa-gtaacagtttaattcaatgaagttagag |
51445290 |
T |
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| Q |
119 |
cat--------agaaatattagatcttcaagtggagagaaagtgtatagggatacttcaattattgggaaatctttggttcattctagtgtgaaaacaaa |
210 |
Q |
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| T |
51445289 |
cattatagtatagaaatattagatcttcaagtggagagaaagtgtatagggatacttcaattattgggaaatctttggttcattctagtgtgaaaacaaa |
51445190 |
T |
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| Q |
211 |
aattatttgaggacagattttgcccttgtttttctgctggtctagatcaaaattgtatctgacctaaggaaatacacctatttcattaaaaaatgaacca |
310 |
Q |
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| T |
51445189 |
aattatttgaggacagattttgcccttgtttttctgctggtctagatcaaaattgtatctgacctaaggaaatacacctatttcattaaaaaatgaacca |
51445090 |
T |
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| Q |
311 |
agtaacaacatatttactttgatttaaagtgtgatgcacgcatgtatgtattttcaaggtatcaaaactaaagtcaataatactatagtactggtaaaga |
410 |
Q |
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| T |
51445089 |
agtaacaacatatttactttgatttaaagtgtgatgcacgcatgtatgtattttcaaggtatcaaaactaaagtcaataatactatagtactggtaaaga |
51444990 |
T |
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| Q |
411 |
atgtttccttttgttctgttcttatgcctttg |
442 |
Q |
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| T |
51444989 |
atgtttccttttgttctgttcttatgcctttg |
51444958 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 39703686 - 39703658
Alignment:
| Q |
38 |
gcgaaattgaggtgcatattgaacaattt |
66 |
Q |
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| T |
39703686 |
gcgaaattgaggtgcatattgaacaattt |
39703658 |
T |
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