View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18603_high_10 (Length: 345)
Name: NF18603_high_10
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 10676384 - 10676701
Alignment:
| Q |
1 |
atggagcaaagcaatggaagatgctttgcttatgtagaactcttaaatctcaatggattaacnnnnnnnnnnnncaaagggtcgcttagatatagtggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10676384 |
atggagcaaagcaatggaagatgctttgcttatgtagaactcttaaatctcaatggattaactatatata----caaagggtcgcttagatatagtggca |
10676479 |
T |
|
| Q |
101 |
gttttgacgtgttataggttttttgttgacataaaaaatgacttacaaactgagctagacttttatggtcacaaacacaaatgttttggatttagaagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10676480 |
gttttgacgtgttataggttttttgttgacataaaaaatgacttacaaactgagcaagacttttatggtcacaaacacaaatgttttggatttagaagtg |
10676579 |
T |
|
| Q |
201 |
ttgctaaatcgaaaaaatttgtgcttgtgaccatagaagtgttgctcgttacaaactaatgtcttcatatatagttcagtacggtagaagtgggggtgcc |
300 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10676580 |
ttggtaaatcgaaaatttttgtgcttgtgaccatagaagtgttgctcgttacaaactaatgtcttcatatatagttcagtacggtagaagtgggggtgcc |
10676679 |
T |
|
| Q |
301 |
acctttctcgttcgtacaactc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10676680 |
acctttctcgttcgtacaactc |
10676701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 10672815 - 10672902
Alignment:
| Q |
102 |
ttttgacgtgttataggttttttgtt---gacataaaaaatgacttacaaactgagctagacttttatggtcacaaacacaaatgtttt |
187 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
10672815 |
tttttacgtgttataggttttttttttttgacataaaaaatgacttacaaacatagctagacttatat-gtcacaaacataaatgtttt |
10672902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 10673524 - 10673560
Alignment:
| Q |
225 |
ttgtgaccatagaagtgttgctcgttacaaactaatg |
261 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10673524 |
ttgtgaccatagaagtgttgcaccttacaaactaatg |
10673560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University