View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_high_15 (Length: 250)
Name: NF18603_high_15
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32261850 - 32261611
Alignment:
| Q |
1 |
ctctgaaagggatgtgtccatttcgccccttgctgtgatcaaattcatattttctacttttttagataaaatcaaaggatacatttcacgaaaagtatat |
100 |
Q |
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| T |
32261850 |
ctctgaaagggatgtgtccatttcgccccttgctgtgatcaaattcatgttttctacttttttagataaaatcaaaggatacatttcacgaaaagtatat |
32261751 |
T |
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| Q |
101 |
aacatctgtgtgagtaaacacatttgaagtgcaaccatttcaagctaacctgagtttgcggatgacagttcctagagtcagtaaactacggttgatgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261750 |
aacatctgtgtgagtaaacacatttgaagtgcaaccatttcaagctaacctgagtttgcggatgacagttcctagagtcagtaaactacggttgatgtgg |
32261651 |
T |
|
| Q |
201 |
catccttctttcaaccttgtaccagctgaattagtctgtg |
240 |
Q |
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| T |
32261650 |
catccttctttcaaccttgtaccagctgaattagtttgtg |
32261611 |
T |
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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 8395202 - 8395128
Alignment:
| Q |
144 |
gctaacctgagtttgcggatgacagttcctagagtcagtaaactacggttgatgtggcatccttctttcaacctt |
218 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||||||||| || || ||||| ||||||||||||||| |
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| T |
8395202 |
gctaacctgagtttgcggataacagttcctagagttaataaactacgatttatatggcaaccttctttcaacctt |
8395128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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